commit: cf03f76f402cd8176bdf07b63e01f6db5e6c5047 Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Tue Jan 19 09:51:00 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> CommitDate: Tue Jan 19 09:51:00 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=cf03f76f
sci-biology/reptile: remove pack, upstream gone Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> profiles/package.mask | 1 - sci-biology/reptile/metadata.xml | 12 ---------- sci-biology/reptile/reptile-1.1.ebuild | 40 ---------------------------------- 3 files changed, 53 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index c5743f05e..2abd24cac 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -96,4 +96,3 @@ sci-biology/pairagon sci-biology/polyphen sci-biology/primerD sci-biology/prokka -sci-biology/reptile diff --git a/sci-biology/reptile/metadata.xml b/sci-biology/reptile/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/sci-biology/reptile/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-biology/reptile/reptile-1.1.ebuild b/sci-biology/reptile/reptile-1.1.ebuild deleted file mode 100644 index f9e9de522..000000000 --- a/sci-biology/reptile/reptile-1.1.ebuild +++ /dev/null @@ -1,40 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -DESCRIPTION="Illumina read corrector" -HOMEPAGE="http://aluru-sun.ece.iastate.edu/doku.php?id=reptile"; -SRC_URI="http://aluru-sun.ece.iastate.edu/lib/exe/fetch.php?media=source:reptile-v${PV}.zip -> "${PN}"-v"${PV}".zip" - -LICENSE="LGPL-3 GPL-3 Boost-1.0" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -DEPEND="" -RDEPEND="${DEPEND} - dev-lang/perl" - -S="${WORKDIR}"/"${PN}"-v"${PV}" - -src_prepare(){ - sed -e 's#-Wall -O3#$(CXXFLAGS)#' -i src/makefile || die - sed -e 's#-Wall -O3#$(CXXFLAGS)#' -i utils/reptile_merger/makefile || die - sed -e 's#-Wall -O3#$(CXXFLAGS)#' -i utils/seq-analy/makefile || die -} - -src_compile(){ - cd src || die - emake all - cd ../utils/reptile_merger || die - emake all - cd ../seq-analy || die - emake all -} - -src_install(){ - newbin src/reptile-v1.1 reptile - dobin utils/reptile_merger/reptile_merger - dobin utils/fastq-converter-v2.0.pl -}
