commit: d08f55efd3ed478e2ebf4a68bc83ee36e875c33c Author: Aisha Tammy <gentoo <AT> aisha <DOT> cc> AuthorDate: Mon Jan 18 21:38:14 2021 +0000 Commit: Aisha Tammy <gentoo <AT> aisha <DOT> cc> CommitDate: Mon Jan 18 21:38:44 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d08f55ef
sci-biology/pvmsx: drop dead package upstream has not updated in 14 years Closes: https://bugs.gentoo.org/755830 Signed-off-by: Aisha Tammy <gentoo <AT> aisha.cc> sci-biology/pvmsx/metadata.xml | 12 ----------- sci-biology/pvmsx/pvmsx-0.1.ebuild | 43 -------------------------------------- 2 files changed, 55 deletions(-) diff --git a/sci-biology/pvmsx/metadata.xml b/sci-biology/pvmsx/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/sci-biology/pvmsx/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-biology/pvmsx/pvmsx-0.1.ebuild b/sci-biology/pvmsx/pvmsx-0.1.ebuild deleted file mode 100644 index b88863a45..000000000 --- a/sci-biology/pvmsx/pvmsx-0.1.ebuild +++ /dev/null @@ -1,43 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -DESCRIPTION="Parallel multi-FASTA file processing tool" -HOMEPAGE="http://compbio.dfci.harvard.edu/tgi/software/"; -SRC_URI=" - ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/${PN}.tar.gz - ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/cdbfasta.tar.gz"; - -LICENSE="Artistic" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -#DEPEND="sys-cluster/pvm" -#RDEPEND="${DEPEND}" - -S=${WORKDIR} - -src_prepare() { - # we need gclib from cdbfasta.tar.gz bundle which has fewer files than tgi_cpp_library.tar.gz wbut has e.g. GStr.h - sed \ - -e 's/CFLAGS[ ]*=/CFLAGS :=/; s/-D_REENTRANT/-D_REENTRANT \${CFLAGS}/; s/CFLAGS[ ]*:=[ ]*-O2$//' \ - -i "${S}"/Makefile || die "Failed to run sed" - sed \ - -e 's#GCLDIR := ../gclib#GCLDIR := ../cdbfasta/gclib#' \ - -i "${S}"/Makefile || die - sed \ - -e "s#-I-#-iquote#" \ - -i "${S}"/Makefile || die - ln -s ../cdbfasta/gcl . || die "Cannot make a softlink" -} - -src_compile() { - default -} - -src_install() { - dobin ${PN} - newdoc README README.${PN} -}
