commit: ed702145ff6aa7244042d67bf68f6e17b621cd94
Author: Jakov Smolic <jakov.smolic <AT> sartura <DOT> hr>
AuthorDate: Mon Jan 18 10:14:15 2021 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Mon Jan 18 10:14:15 2021 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ed702145
sci-chemistry/pymol: Remove old
Signed-off-by: Jakov Smolic <jakov.smolic <AT> sartura.hr>
Signed-off-by: David Seifert <soap <AT> gentoo.org>
sci-chemistry/pymol/pymol-2.4.0.ebuild | 115 ---------------------------------
1 file changed, 115 deletions(-)
diff --git a/sci-chemistry/pymol/pymol-2.4.0.ebuild
b/sci-chemistry/pymol/pymol-2.4.0.ebuild
deleted file mode 100644
index 5dd5d436776..00000000000
--- a/sci-chemistry/pymol/pymol-2.4.0.ebuild
+++ /dev/null
@@ -1,115 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{6,7,8,9} )
-DISTUTILS_USE_SETUPTOOLS=no
-
-inherit distutils-r1 desktop optfeature flag-o-matic xdg-utils
-
-DESCRIPTION="A Python-extensible molecular graphics system"
-HOMEPAGE="https://www.pymol.org/";
-SRC_URI="
- https://dev.gentoo.org/~jlec/distfiles/${PN}-1.8.4.0.png.xz
- https://github.com/schrodinger/pymol-open-source/archive/v${PV}.tar.gz
-> ${P}.tar.gz
- "
-RESTRICT="mirror"
-LICENSE="PSF-2.2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos"
-IUSE="web"
-
-DEPEND="
- dev-libs/msgpack[cxx]
- dev-libs/mmtf-cpp
- dev-python/pyopengl[${PYTHON_USEDEP}]
- dev-python/PyQt5[opengl,${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/pmw[${PYTHON_USEDEP}]
- media-libs/freetype:2
- media-libs/glew:0=
- media-libs/glm
- media-libs/libpng:0=
- media-video/mpeg-tools
- sys-libs/zlib
-"
-RDEPEND="${DEPEND}
- sci-chemistry/chemical-mime-data
-"
-
-S="${WORKDIR}"/${PN}-open-source-${PV}
-
-python_prepare_all() {
- sed \
- -e "s:\"/usr:\"${EPREFIX}/usr:g" \
- -e "/ext_comp_args.*+=/s:\[.*\]$:\[\]:g" \
- -e "/import/s:argparse:argparseX:g" \
- -i setup.py || die
-
- sed \
- -e "s:/opt/local:${EPREFIX}/usr:g" \
- -e '/ext_comp_args/s:\[.*\]:[]:g' \
- -i setup.py || die
- sed \
- -e "s:\['msgpackc'\]:\['msgpack'\]:g" \
- -i setup.py || die
-
- append-cxxflags -std=c++0x
-
- distutils-r1_python_prepare_all
-}
-
-python_install() {
- distutils-r1_python_install \
- --pymol-path="${EPREFIX}/usr/share/pymol"
-
- sed \
- -e '1d' \
- -e "/APBS_BINARY_LOCATION/s:None:\"${EPREFIX}/usr/bin/apbs\":g"
\
- -e
"/APBS_PSIZE_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/src/\":g" \
- -e
"/APBS_PDB2PQR_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/\":g" \
- -i "${D}/$(python_get_sitedir)"/pmg_tk/startup/apbs_tools.py ||
die
-}
-
-python_install_all() {
- distutils-r1_python_install_all
-
- sed \
- -e '1i#!/usr/bin/env python' \
- "${D}/$(python_get_sitedir)"/pymol/__init__.py > "${T}"/${PN}
|| die
-
- python_foreach_impl python_doscript "${T}"/${PN}
-
- # These environment variables should not go in the wrapper script, or
else
- # it will be impossible to use the PyMOL libraries from Python.
- cat >> "${T}"/20pymol <<- EOF || die
- PYMOL_PATH="${EPREFIX}/usr/share/pymol"
- PYMOL_DATA="${EPREFIX}/usr/share/pymol/data"
- PYMOL_SCRIPTS="${EPREFIX}/usr/share/pymol/scripts"
- EOF
-
- doenvd "${T}"/20pymol
-
- newicon "${WORKDIR}"/${PN}-1.8.4.0.png ${PN}.png
- make_desktop_entry ${PN} PyMol ${PN} \
- "Graphics;Education;Science;Chemistry;" \
-
"MimeType=chemical/x-pdb;chemical/x-mdl-molfile;chemical/x-mol2;chemical/seq-aa-fasta;chemical/seq-na-fasta;chemical/x-xyz;chemical/x-mdl-sdf;"
-
- if ! use web; then
- rm -rf "${D}/$(python_get_sitedir)/web" || die
- fi
-
- rm -f "${ED}"/usr/share/${PN}/LICENSE || die
-}
-
-pkg_postinst() {
- xdg_desktop_database_update
- xdg_mimeinfo_database_update
- optfeature "Electrostatic calculations" sci-chemistry/apbs
sci-chemistry/pdb2pqr
-}
-
-pkg_postrm() {
- xdg_desktop_database_update
- xdg_mimeinfo_database_update
-}
