[gentoo-commits] proj/sci:master commit in: sci-biology/kat/

[Andrew Ammerlaan]

commit:     0e4a7cec8abd9f06360d25996f05c7d1633f289d
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Fri Jan 15 20:28:03 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Fri Jan 15 20:28:03 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=0e4a7cec

sci-biology/kat: bump py targets

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/kat/kat-2.4.2.ebuild | 15 ++++++++++-----
 sci-biology/kat/kat-9999.ebuild  | 15 ++++++++++-----
 2 files changed, 20 insertions(+), 10 deletions(-)

diff --git a/sci-biology/kat/kat-2.4.2.ebuild b/sci-biology/kat/kat-2.4.2.ebuild
index e8f10ad5d..39c4fc6c1 100644
--- a/sci-biology/kat/kat-2.4.2.ebuild
+++ b/sci-biology/kat/kat-2.4.2.ebuild
@@ -1,9 +1,10 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
 
-PYTHON_COMPAT=( python3_{5,6} )
+PYTHON_COMPAT=( python3_{7,8,9} )
+DISTUTILS_USE_SETUPTOOLS=rdepend
 # https://github.com/Ensembl/Bio-DB-HTS/issues/30
 
 inherit flag-o-matic autotools distutils-r1
@@ -23,9 +24,9 @@ CDEPEND="
        dev-python/tabulate[${PYTHON_USEDEP}]
        dev-python/matplotlib[${PYTHON_USEDEP}]
        dev-python/numpy[${PYTHON_USEDEP}]
-       dev-python/scipy[${PYTHON_USEDEP}]"
+       dev-python/scipy[${PYTHON_USEDEP}]
+"
 DEPEND="${CDEPEND}
-       dev-python/sphinx
        test? ( sys-process/time )"
 RDEPEND="${CDEPEND}"
 # contains bundled and *modified* version of jellyfish-2.2.0
@@ -40,6 +41,9 @@ PATCHES=(
 
 S="${WORKDIR}"/KAT-Release-"${PV}"
 
+distutils_enable_sphinx "${S}/doc/source" --no-autodoc
+distutils_enable_tests pytest
+
 src_prepare(){
        default
        rm -rf deps/boost || die "Failed to zap bundled boost"
@@ -75,4 +79,5 @@ src_install(){
 
 src_test(){
        default
+       python_foreach_impl python_test
 }

diff --git a/sci-biology/kat/kat-9999.ebuild b/sci-biology/kat/kat-9999.ebuild
index 961dc9ce8..752dab83c 100644
--- a/sci-biology/kat/kat-9999.ebuild
+++ b/sci-biology/kat/kat-9999.ebuild
@@ -1,9 +1,10 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
 
-PYTHON_COMPAT=( python3_{5,6} )
+PYTHON_COMPAT=( python3_{7,8,9} )
+DISTUTILS_USE_SETUPTOOLS=rdepend
 # https://github.com/Ensembl/Bio-DB-HTS/issues/30
 
 inherit flag-o-matic autotools distutils-r1 git-r3
@@ -24,9 +25,9 @@ CDEPEND="
        dev-python/tabulate[${PYTHON_USEDEP}]
        dev-python/matplotlib[${PYTHON_USEDEP}]
        dev-python/numpy[${PYTHON_USEDEP}]
-       dev-python/scipy[${PYTHON_USEDEP}]"
+       dev-python/scipy[${PYTHON_USEDEP}]
+"
 DEPEND="${CDEPEND}
-       dev-python/sphinx
        test? ( sys-process/time )"
 RDEPEND="${CDEPEND}"
 # contains bundled and *modified* version of jellyfish-2.2.0
@@ -41,6 +42,9 @@ PATCHES=(
 
 S="${WORKDIR}"/KAT-Release-"${PV}"
 
+distutils_enable_sphinx "${S}/doc/source" --no-autodoc
+distutils_enable_tests pytest
+
 src_prepare(){
        default
        rm -rf deps/boost || die "Failed to zap bundled boost"
@@ -76,4 +80,5 @@ src_install(){
 
 src_test(){
        default
+       python_foreach_impl python_test
 }