commit: b53aea0d3fed2eb6dadf7513bd232a58a871316d Author: Christoph Junghans <ottxor <AT> gentoo <DOT> org> AuthorDate: Tue Sep 16 17:45:16 2014 +0000 Commit: Christoph Junghans <ottxor <AT> gentoo <DOT> org> CommitDate: Tue Sep 16 17:45:16 2014 +0000 URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=b53aea0d
clean up Package-Manager: portage-2.2.8-r1 --- sci-biology/manatee-jcvi/ChangeLog | 6 +++-- sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild | 26 +++++++++++----------- 2 files changed, 17 insertions(+), 15 deletions(-) diff --git a/sci-biology/manatee-jcvi/ChangeLog b/sci-biology/manatee-jcvi/ChangeLog index ab9e1df..71bda27 100644 --- a/sci-biology/manatee-jcvi/ChangeLog +++ b/sci-biology/manatee-jcvi/ChangeLog @@ -1,11 +1,13 @@ # ChangeLog for sci-biology/manatee-jcvi -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 16 Sep 2014; Christoph Junghans <[email protected]> manatee-jcvi-2.4.3.ebuild: + clean up + *manatee-jcvi-2.4.3 (29 Aug 2013) 29 Aug 2013; Martin Mokrejs <[email protected]> +manatee-jcvi-2.4.3.ebuild, +metadata.xml: Initial ebuild for the other version of manatee, using different database schema. - diff --git a/sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild b/sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild index c04c5fa..7eec8b2 100644 --- a/sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild +++ b/sci-biology/manatee-jcvi/manatee-jcvi-2.4.3.ebuild @@ -2,9 +2,9 @@ # Distributed under the terms of the GNU General Public License v2 # $Header: $ -EAPI=3 +EAPI=5 -DESCRIPTION="A JCVI version of Manatee: a genome annotation tool that can view, modify, and store annotation for prokaryotic and eukaryotic genomes." +DESCRIPTION="genome annotation tool: view, modify, and store annotation for prokaryotic and eukaryotic genomes." HOMEPAGE="http://manatee.sourceforge.net/jcvi/downloads.shtml"; SRC_URI="http://downloads.sourceforge.net/project/manatee/manatee/manatee-2.4.3/manatee-2.4.3.tgz"; @@ -16,9 +16,6 @@ IUSE="" DEPEND=">=dev-libs/expat-1.95.8 >=media-libs/gd-2.0.34 - dev-perl/CGI - dev-perl/CGI-Carp - dev-perl/CGI-Cookie dev-perl/DBI dev-perl/DBD-mysql dev-perl/XML-Parser @@ -27,17 +24,20 @@ DEPEND=">=dev-libs/expat-1.95.8 dev-perl/XML-Writer dev-perl/HTML-Template dev-perl/Tree-DAG_Node - dev-perl/File-Spec - dev-perl/Data-Dumper + perl-core/File-Spec + perl-core/Data-Dumper dev-perl/GD - dev-perl/GD-Text - dev-perl/GD-Graph - dev-perl/Storable + perl-core/Storable dev-perl/Log-Log4perl dev-perl/Log-Cabin - dev-perl/Date-Manip dev-perl/IO-Tee dev-perl/MLDBM" + #dev-perl/CGI + #dev-perl/CGI-Carp + #dev-perl/CGI-Cookie + #dev-perl/GD-Text + #dev-perl/GD-Graph + #dev-perl/Date-Manip RDEPEND="${DEPEND} >=dev-db/mysql-5.0 >=www-servers/apache-2.2" @@ -45,9 +45,9 @@ RDEPEND="${DEPEND} S="${WORKDIR}"/manatee-"${PV}" src_configure(){ - econf HTTPD=/usr/sbin/httpd HTTPD_SCRIPT_HOME=/var/www/cgi-bin HTTPD_DOC_HOME=/var/www/htdocs MYSQLD=/usr/sbin/mysqld || die + econf HTTPD=/usr/sbin/httpd HTTPD_SCRIPT_HOME=/var/www/cgi-bin HTTPD_DOC_HOME=/var/www/htdocs MYSQLD=/usr/sbin/mysqld } src_compile(){ - emake || die + emake }
