commit: c9b9e54c8a322ac7d623f844c7edab0f3187965e Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> AuthorDate: Sun Jan 10 13:37:38 2021 +0000 Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> CommitDate: Sun Jan 10 13:37:38 2021 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c9b9e54c
sci-biology/pbbam: add 1.6.0 version Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> sci-biology/pbbam/pbbam-1.6.0.ebuild | 26 +++++++++++++++++++++++ sci-biology/pbbam/pbbam-9999.ebuild | 41 ++++++++---------------------------- 2 files changed, 35 insertions(+), 32 deletions(-) diff --git a/sci-biology/pbbam/pbbam-1.6.0.ebuild b/sci-biology/pbbam/pbbam-1.6.0.ebuild new file mode 100644 index 000000000..98f0089e3 --- /dev/null +++ b/sci-biology/pbbam/pbbam-1.6.0.ebuild @@ -0,0 +1,26 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit meson + +DESCRIPTION="PacBio modified BAM file format" +HOMEPAGE="https://pbbam.readthedocs.io/en/latest/index.html"; +SRC_URI="https://github.com/PacificBiosciences/pbbam/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="blasr" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +BDEPEND=" + virtual/pkgconfig + >=dev-cpp/gtest-1.8.1 + >=dev-lang/swig-3.0.5 +" +DEPEND=" + sci-biology/pbcopper + >=sci-libs/htslib-1.3.1:= + >=dev-libs/boost-1.55:=[threads] +" +RDEPEND="${DEPEND}" diff --git a/sci-biology/pbbam/pbbam-9999.ebuild b/sci-biology/pbbam/pbbam-9999.ebuild index 5593b4072..1f03ab1a9 100644 --- a/sci-biology/pbbam/pbbam-9999.ebuild +++ b/sci-biology/pbbam/pbbam-9999.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2019 Gentoo Authors +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 -inherit git-r3 multilib +inherit git-r3 meson DESCRIPTION="PacBio modified BAM file format" HOMEPAGE="https://pbbam.readthedocs.io/en/latest/index.html"; @@ -11,39 +11,16 @@ EGIT_REPO_URI="https://github.com/PacificBiosciences/pbbam.git"; LICENSE="blasr" SLOT="0" -IUSE="hdf5 doc" KEYWORDS="" -# https://github.com/PacificBiosciences/pbbam/issues/25 -CDEPEND=" - dev-util/meson - dev-util/ninja - dev-util/pkgconfig +BDEPEND=" + virtual/pkgconfig >=dev-cpp/gtest-1.8.1 >=dev-lang/swig-3.0.5 - doc? ( app-doc/doxygen )" +" DEPEND=" + sci-biology/pbcopper >=sci-libs/htslib-1.3.1:= >=dev-libs/boost-1.55:=[threads] - hdf5? ( >=sci-libs/hdf5-1.8.12[cxx] )" # needs H5Cpp.h -RDEPEND="" - -#S="${WORKDIR}/${PN}" - -src_compile(){ - mkdir -p build || die - cd build || die - meson --prefix "${ED}/usr" || die - ninja || die - use doc && ( ninja doc ) -} - -src_install() { - cd build || die - ninja install || die - #dobin bin/* - #insinto /usr/include - #doins include/* - #insinto /usr/$(get_libdir)/${P} - #doins lib/* -} +" +RDEPEND="${DEPEND}"
