commit: 7d27922859885b7121223a2417f955bcb6b61497
Author: Carl Dong <carldong76 <AT> gmail <DOT> com>
AuthorDate: Sun Sep 7 00:13:57 2014 +0000
Commit: Jauhien Piatlicki <jauhien <AT> gentoo <DOT> org>
CommitDate: Sun Sep 7 00:13:57 2014 +0000
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=7d279228
Merge pull request #1 from gentoo-science/master
Sync
dev-libs/simclist/Manifest | 3 -
dev-ml/mlgmpidl/Manifest | 4 -
dev-ml/ocamlgraph/Manifest | 4 -
dev-ml/zarith/Manifest | 3 -
dev-ml/zarith/metadata.xml | 4 +
licenses/{CeCILL-2.1 => CeCILL-2.0} | 164 ++++++-------
licenses/HGSC-BCM | 8 +
licenses/Non-profit-OSL-3.0 | 63 +++++
{app-text/dgs => sci-biology/VarScan}/metadata.xml | 0
sci-biology/eval/ChangeLog | 3 +
sci-biology/eval/eval-2.2.8.ebuild | 3 +-
sci-biology/sga/metadata.xml | 3 +
sci-biology/sickle/sickle-9999.ebuild | 2 +-
sci-chemistry/gromacs/ChangeLog | 13 +
sci-chemistry/gromacs/Manifest | 2 -
sci-chemistry/gromacs/gromacs-5.0.9999.ebuild | 17 +-
sci-chemistry/gromacs/gromacs-5.0_rc1.ebuild | 268 ---------------------
sci-chemistry/votca-csg/ChangeLog | 5 +-
sci-chemistry/votca-csg/votca-csg-9999.ebuild | 14 +-
sci-chemistry/votca-csgapps/ChangeLog | 5 +-
.../votca-csgapps/votca-csgapps-9999.ebuild | 10 +-
sci-libs/calculix-ccx/ChangeLog | 11 +-
sci-libs/calculix-ccx/Manifest | 6 +-
...ulix-ccx-2.2.ebuild => calculix-ccx-2.7.ebuild} | 19 +-
.../calculix-ccx/files/01_ccx_2.2_Makefile.patch | 23 --
.../calculix-ccx/files/01_ccx_2.2_lapack.patch | 21 --
...7_Makefile_custom_cc_flags_spooles_arpack.patch | 31 +++
.../calculix-ccx/files/01_ccx_2.7_lapack.patch | 11 +
sci-libs/calculix-cgx/ChangeLog | 10 +-
sci-libs/calculix-cgx/Manifest | 4 +-
...ulix-cgx-2.2.ebuild => calculix-cgx-2.7.ebuild} | 23 +-
... => 01_cgx_2.7_Makefile_custom_cxx_flags.patch} | 39 ++-
sci-libs/gmsh/ChangeLog | 19 +-
sci-libs/gmsh/Manifest | 2 +-
sci-libs/gmsh/files/gmsh-2.5.0-libpng-1.5.patch | 10 -
sci-libs/gmsh/files/gmsh-2.5.0-link.patch | 16 --
sci-libs/gmsh/gmsh-2.5.0-r1.ebuild | 91 -------
.../gmsh/{gmsh-2.5.0.ebuild => gmsh-2.8.5.ebuild} | 10 +-
sci-libs/gmsh/gmsh-9999.ebuild | 87 -------
sci-libs/m4ri/ChangeLog | 24 --
sci-libs/m4ri/Manifest | 2 -
sci-libs/m4ri/m4ri-20090512.ebuild | 18 --
sci-libs/m4ri/m4ri-20100221.ebuild | 38 ---
sci-libs/m4ri/metadata.xml | 6 -
sci-libs/med/ChangeLog | 6 +-
sci-libs/med/med-2.3.6.ebuild | 2 +-
sci-libs/votca-tools/ChangeLog | 5 +-
sci-libs/votca-tools/votca-tools-9999.ebuild | 12 +-
sci-mathematics/alt-ergo/Manifest | 3 -
sci-mathematics/apron/Manifest | 4 -
sci-mathematics/apron/metadata.xml | 3 +
sci-mathematics/flocq/Manifest | 3 -
sci-mathematics/frama-c/Manifest | 4 -
sci-mathematics/gappa/Manifest | 3 -
sci-mathematics/gappalib-coq/Manifest | 3 -
sci-mathematics/giac/metadata.xml | 2 +-
sci-mathematics/ltl2ba/Manifest | 3 -
sci-mathematics/petsc/ChangeLog | 8 +
sci-mathematics/petsc/petsc-3.4.2.ebuild | 10 +-
sci-mathematics/petsc/petsc-3.5.1.ebuild | 10 +-
sci-mathematics/pff/Manifest | 3 -
sci-mathematics/why/Manifest | 4 -
sci-mathematics/why/metadata.xml | 10 +
sci-mathematics/why3/Manifest | 3 -
sci-mathematics/why3/metadata.xml | 4 +
sci-physics/bigdft/ChangeLog | 11 +-
sci-physics/bigdft/Manifest | 2 +-
...bigdft-1.7_pre24.ebuild => bigdft-1.7.5.ebuild} | 77 ++++--
.../files/bigdft-1.7-dev.24-nolib_mods.patch | 25 --
.../bigdft/files/bigdft-1.7.5-dynamic_memory.patch | 106 ++++++++
.../bigdft/files/bigdft-1.7.5-pkgconfig.patch | 10 +
.../bigdft-abi => sci-physics/bigdft}/metadata.xml | 10 +-
sci-physics/clip/Manifest | 3 -
sci-physics/herwig++/ChangeLog | 8 +
sci-physics/herwig++/Manifest | 1 +
sci-physics/herwig++/herwig++-2.7.0-r1.ebuild | 2 +-
...wig++-2.7.0-r1.ebuild => herwig++-2.7.1.ebuild} | 6 +-
sci-physics/herwig++/metadata.xml | 2 +-
sci-physics/looptools/ChangeLog | 9 +
sci-physics/looptools/Manifest | 3 +
...akefile.patch => looptools-2.10-makefile.patch} | 8 +-
...{looptools-2.8.ebuild => looptools-2.10.ebuild} | 0
...{looptools-2.8.ebuild => looptools-2.11.ebuild} | 2 +-
.../{looptools-2.8.ebuild => looptools-2.9.ebuild} | 2 +-
sci-physics/rivet/ChangeLog | 5 +
sci-physics/rivet/Manifest | 1 +
.../{rivet-2.1.1.ebuild => rivet-2.1.2.ebuild} | 0
sci-physics/tauola/ChangeLog | 11 +-
sci-physics/tauola/Manifest | 1 +
sci-physics/tauola/files/tauola-1.1.5-doc.patch | 11 +
.../{tauola-1.1.4.ebuild => tauola-1.1.5.ebuild} | 3 +-
sci-physics/thepeg/ChangeLog | 15 ++
sci-physics/thepeg/Manifest | 1 +
sci-physics/thepeg/metadata.xml | 5 +-
...{thepeg-1.8.3.ebuild => thepeg-1.8.3-r1.ebuild} | 5 +
...epeg-1.9.0-r1.ebuild => thepeg-1.9.0-r2.ebuild} | 5 +
...{thepeg-1.9.1.ebuild => thepeg-1.9.1-r1.ebuild} | 5 +
.../{thepeg-1.9.1.ebuild => thepeg-1.9.2.ebuild} | 8 +-
sys-cluster/mpich2/mpich2-1.5.ebuild | 2 +-
99 files changed, 695 insertions(+), 894 deletions(-)
