commit: d51c2ced7b3d8950894746f66da1c07712a00feb Author: Horea Christian <chr <AT> chymera <DOT> eu> AuthorDate: Tue Sep 29 06:39:20 2020 +0000 Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> CommitDate: Tue Sep 29 06:39:20 2020 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d51c2ced
sci-mathematics/dolfin: removed package with missing dep Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr <AT> chymera.eu> sci-mathematics/dolfin/dolfin-0.9.9.ebuild | 56 --------------- sci-mathematics/dolfin/dolfin-2016.2.0-r2.ebuild | 80 ---------------------- sci-mathematics/dolfin/dolfin-2017.1.0.ebuild | 80 ---------------------- .../dolfin/files/dolfin-0.9.9-find-armadillo.patch | 25 ------- .../files/dolfin-2016.2.0-trilinos-superlu.patch | 21 ------ sci-mathematics/dolfin/metadata.xml | 26 ------- 6 files changed, 288 deletions(-) diff --git a/sci-mathematics/dolfin/dolfin-0.9.9.ebuild b/sci-mathematics/dolfin/dolfin-0.9.9.ebuild deleted file mode 100644 index 4677e51b2..000000000 --- a/sci-mathematics/dolfin/dolfin-0.9.9.ebuild +++ /dev/null @@ -1,56 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit cmake-utils eutils python-single-r1 - -DESCRIPTION="C++/Python interface of FEniCS" -HOMEPAGE="https://launchpad.net/dolfin/"; -SRC_URI="https://launchpad.net/${PN}/0.x/${PV}/+download/${P}.tar.gz"; - -LICENSE="LGPL-2.1" -SLOT="0" -KEYWORDS="~amd64" -IUSE="cgal cholmod gmp mpi parmetis python scotch umfpack zlib" -# scotch and parmetis require mpi; wait for EAPI 4 - -REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" - -DEPEND=" - dev-libs/boost - dev-libs/libxml2:2 - sci-libs/armadillo - sci-mathematics/ufc - python? ( - ${PYTHON_DEPS} - dev-python/ufl[${PYTHON_USEDEP}] - dev-python/ffc[${PYTHON_USEDEP}] - dev-python/fiat[${PYTHON_USEDEP}] - dev-python/instant[${PYTHON_USEDEP}] - dev-python/viper[${PYTHON_USEDEP}] - )" -RDEPEND="${DEPEND}" - -pkg_setup() { - use python && python-single-r1_pkg_setup -} - -src_prepare() { - epatch "${FILESDIR}"/"${P}"-find-armadillo.patch -} - -pkg_setup() { - mycmakeargs="${mycmakeargs} - $(cmake-utils_use cgal DOLFIN_ENABLE_CGAL) - $(cmake-utils_use cholmod DOLFIN_ENABLE_CHOLMOD) - $(cmake-utils_use gmp DOLFIN_ENABLE_GMP) - $(cmake-utils_use mpi DOLFIN_ENABLE_MPI) - $(cmake-utils_use parmetis DOLFIN_ENABLE_PARMETIS) - $(cmake-utils_use python DOLFIN_ENABLE_PYTHON) - $(cmake-utils_use scotch DOLFIN_ENABLE_SCOTCH) - $(cmake-utils_use umfpack DOLFIN_ENABLE_UMFPACK) - $(cmake-utils_use zlib DOLFIN_ENABLE_ZLIB)" -} diff --git a/sci-mathematics/dolfin/dolfin-2016.2.0-r2.ebuild b/sci-mathematics/dolfin/dolfin-2016.2.0-r2.ebuild deleted file mode 100644 index 169611161..000000000 --- a/sci-mathematics/dolfin/dolfin-2016.2.0-r2.ebuild +++ /dev/null @@ -1,80 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python2_7 ) - -inherit cmake-utils eutils python-single-r1 - -DESCRIPTION="C++/Python interface of FEniCS" -HOMEPAGE="https://bitbucket.org/fenics-project/dolfin"; -SRC_URI="https://bitbucket.org/fenics-project/${PN}/downloads/${P}.tar.gz"; - -LICENSE="LGPL-2.1" -SLOT="0" -KEYWORDS="~amd64" -IUSE="hdf5 mpi parmetis petsc scotch trilinos umfpack zlib vtk" - -REQUIRED_USE="${PYTHON_REQUIRED_USE} - trilinos? ( mpi )" - -# Yes, swig is an RDEPEND -DEPEND=" - ${PYTHON_DEPS} - dev-cpp/eigen:3 - dev-lang/swig - dev-libs/boost:= - dev-libs/libxml2:2 - ~dev-python/dijitso-${PV}[${PYTHON_USEDEP}] - ~dev-python/ffc-${PV}[${PYTHON_USEDEP}] - ~dev-python/fiat-${PV}[${PYTHON_USEDEP}] - ~dev-python/instant-${PV}[${PYTHON_USEDEP}] - dev-python/sympy - ~dev-python/ufl-${PV}[${PYTHON_USEDEP}] - virtual/blas - virtual/lapack - hdf5? ( sci-libs/hdf5[mpi=] ) - mpi? ( virtual/mpi ) - parmetis? ( sci-libs/parmetis[mpi(+)] ) - petsc? ( sci-mathematics/petsc[mpi=] ) - sci-libs/armadillo - scotch? ( sci-libs/scotch ) - trilinos? ( sci-libs/trilinos ) - umfpack? ( - sci-libs/amd - sci-libs/cholmod - sci-libs/umfpack - ) - vtk? ( sci-libs/vtk ) - zlib? ( sys-libs/zlib )" -RDEPEND="${DEPEND}" - -PATCHES=( - "${FILESDIR}"/${P}-trilinos-superlu.patch -) - -pkg_setup() { - python-single-r1_pkg_setup -} - -src_configure() { - # *sigh* - addpredict /proc/mtrr - addpredict /sys/devices/system/cpu/ - - mycmakeargs=( - -DDOLFIN_ENABLE_CHOLMOD="$(usex umfpack)" - -DDOLFIN_ENABLE_HDF5="$(usex hdf5)" - -DDOLFIN_ENABLE_MPI="$(usex mpi)" - -DDOLFIN_ENABLE_PARMETIS="$(usex parmetis)" - -DDOLFIN_ENABLE_PETSC="$(usex petsc)" - -DDOLFIN_ENABLE_PYTHON="yes" - -DDOLFIN_ENABLE_SCOTCH="$(usex scotch)" - -DDOLFIN_ENABLE_TRILINOS="$(usex trilinos)" - -DDOLFIN_ENABLE_UMFPACK="$(usex umfpack)" - -DDOLFIN_ENABLE_VTK="$(usex vtk)" - -DDOLFIN_ENABLE_ZLIB="$(usex zlib)" - ) - cmake-utils_src_configure -} diff --git a/sci-mathematics/dolfin/dolfin-2017.1.0.ebuild b/sci-mathematics/dolfin/dolfin-2017.1.0.ebuild deleted file mode 100644 index b5b66a708..000000000 --- a/sci-mathematics/dolfin/dolfin-2017.1.0.ebuild +++ /dev/null @@ -1,80 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python3_4 python3_5 python3_6 ) - -inherit cmake-utils eutils python-single-r1 - -DESCRIPTION="C++/Python interface of FEniCS" -HOMEPAGE="https://bitbucket.org/fenics-project/dolfin"; -SRC_URI="https://bitbucket.org/fenics-project/${PN}/downloads/${P}.tar.gz"; - -LICENSE="LGPL-2.1" -SLOT="0" -KEYWORDS="~amd64" -IUSE="hdf5 mpi parmetis petsc scotch trilinos umfpack zlib vtk" - -REQUIRED_USE="${PYTHON_REQUIRED_USE} - trilinos? ( mpi )" - -# Yes, swig is an RDEPEND -DEPEND=" - ${PYTHON_DEPS} - dev-cpp/eigen:3 - dev-lang/swig - dev-libs/boost:= - dev-libs/libxml2:2 - ~dev-python/dijitso-${PV}[${PYTHON_USEDEP}] - ~dev-python/ffc-${PV}[${PYTHON_USEDEP}] - ~dev-python/fiat-${PV}[${PYTHON_USEDEP}] - ~dev-python/instant-${PV}[${PYTHON_USEDEP}] - dev-python/sympy - ~dev-python/ufl-${PV}[${PYTHON_USEDEP}] - virtual/blas - virtual/lapack - hdf5? ( sci-libs/hdf5[mpi=] ) - mpi? ( virtual/mpi ) - parmetis? ( sci-libs/parmetis[mpi(+)] ) - petsc? ( sci-mathematics/petsc[mpi=] ) - sci-libs/armadillo - scotch? ( sci-libs/scotch ) - trilinos? ( sci-libs/trilinos ) - umfpack? ( - sci-libs/amd - sci-libs/cholmod - sci-libs/umfpack - ) - vtk? ( sci-libs/vtk ) - zlib? ( sys-libs/zlib )" -RDEPEND="${DEPEND}" - -PATCHES=( - "${FILESDIR}"/${PN}-2016.2.0-trilinos-superlu.patch -) - -pkg_setup() { - python-single-r1_pkg_setup -} - -src_configure() { - # *sigh* - addpredict /proc/mtrr - addpredict /sys/devices/system/cpu/ - - mycmakeargs=( - -DDOLFIN_ENABLE_CHOLMOD="$(usex umfpack)" - -DDOLFIN_ENABLE_HDF5="$(usex hdf5)" - -DDOLFIN_ENABLE_MPI="$(usex mpi)" - -DDOLFIN_ENABLE_PARMETIS="$(usex parmetis)" - -DDOLFIN_ENABLE_PETSC="$(usex petsc)" - -DDOLFIN_ENABLE_PYTHON="yes" - -DDOLFIN_ENABLE_SCOTCH="$(usex scotch)" - -DDOLFIN_ENABLE_TRILINOS="$(usex trilinos)" - -DDOLFIN_ENABLE_UMFPACK="$(usex umfpack)" - -DDOLFIN_ENABLE_VTK="$(usex vtk)" - -DDOLFIN_ENABLE_ZLIB="$(usex zlib)" - ) - cmake-utils_src_configure -} diff --git a/sci-mathematics/dolfin/files/dolfin-0.9.9-find-armadillo.patch b/sci-mathematics/dolfin/files/dolfin-0.9.9-find-armadillo.patch deleted file mode 100644 index 677a78aab..000000000 --- a/sci-mathematics/dolfin/files/dolfin-0.9.9-find-armadillo.patch +++ /dev/null @@ -1,25 +0,0 @@ -diff -Naur a/cmake/modules/FindArmadillo.cmake b/cmake/modules/FindArmadillo.cmake ---- a/cmake/modules/FindArmadillo.cmake 2010-09-02 02:49:57.000000000 +0200 -+++ b/cmake/modules/FindArmadillo.cmake 2010-12-15 14:21:34.810300165 +0100 -@@ -95,8 +95,8 @@ - #include <armadillo> - int main() - { -- arma::mat A = arma::rand(4, 4); -- arma::vec b = arma::rand(4); -+ arma::mat A = arma::randu(4, 4); -+ arma::vec b = arma::randu(4); - arma::vec x = arma::solve(A, b); - return 0; - } -@@ -112,8 +112,8 @@ - #include <armadillo> - int main() - { -- arma::mat A = arma::rand(4, 4); -- arma::vec b = arma::rand(4); -+ arma::mat A = arma::randu(4, 4); -+ arma::vec b = arma::randu(4); - arma::vec x = arma::solve(A, b); - return 0; - } diff --git a/sci-mathematics/dolfin/files/dolfin-2016.2.0-trilinos-superlu.patch b/sci-mathematics/dolfin/files/dolfin-2016.2.0-trilinos-superlu.patch deleted file mode 100644 index 7282766fe..000000000 --- a/sci-mathematics/dolfin/files/dolfin-2016.2.0-trilinos-superlu.patch +++ /dev/null @@ -1,21 +0,0 @@ -diff --git a/dolfin/CMakeLists.txt b/dolfin/CMakeLists.txt -index 26bc21a..0caf7ca 100644 ---- a/dolfin/CMakeLists.txt -+++ b/dolfin/CMakeLists.txt -@@ -2,6 +2,7 @@ set(DOLFIN_H dolfin.h) - install(FILES ${DOLFIN_H} DESTINATION ${DOLFIN_INCLUDE_DIR} - COMPONENT Development) - -+ - # Configure and install dolfin/common/version.h file - string(REPLACE "+" "" DOLFIN_VERSION_MICRO_STRIPPED ${DOLFIN_VERSION_MICRO}) - configure_file(${DOLFIN_SOURCE_DIR}/dolfin/common/version.h.in -@@ -12,6 +13,8 @@ install(FILES ${CMAKE_BINARY_DIR}/dolfin/common/version.h - ) - include_directories(${CMAKE_BINARY_DIR}) - -+include_directories(/usr/include/superlu) -+ - #------------------------------------------------------------------------------ - # DOLFIN source directories - diff --git a/sci-mathematics/dolfin/metadata.xml b/sci-mathematics/dolfin/metadata.xml deleted file mode 100644 index 26a0480f0..000000000 --- a/sci-mathematics/dolfin/metadata.xml +++ /dev/null @@ -1,26 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Mathematics Project</name> - </maintainer> - <longdescription lang="en"> -DOLFIN is the C++/Python interface of FEniCS, providing a consistent PSE (Problem Solving Environment) for ordinary and partial differential equations. -</longdescription> - <use> - <flag name="cgal">Adds support for geometric algorithms with <pkg>sci-mathematics/cgal</pkg></flag> - <flag name="cholmod">Adds support for sparse Cholesky factorization with <pkg>sci-libs/cholmod</pkg></flag> - <flag name="hdf5">Adds support for <pkg>sci-libs/hdf5</pkg></flag> - <flag name="parmetis">Adds support for parallel graph partitioning with <pkg>sci-libs/parmetis</pkg></flag> - <flag name="petsc">Adds support for numerical linear algebra toolkit <pkg>sci-mathematics/petsc</pkg></flag> - <flag name="scotch">Adds support for graph partitioning with <pkg>sci-libs/scotch</pkg></flag> - <flag name="trilinos">Adds support for numerical linear algebra toolkit <pkg>sci-libs/trilinos</pkg></flag> - <flag name="umfpack">Adds support for sparse solving with <pkg>sci-libs/umfpack</pkg></flag> - <flag name="vtk">Adds support for the visualization toolkit <pkg>sci-libs/vtk</pkg></flag> - </use> - <upstream> - <remote-id type="bitbucket">fenics-project/dolfin</remote-id> - <remote-id type="launchpad">dolfin</remote-id> - </upstream> -</pkgmetadata>
