commit: 1a7addf40ba3a1e97f3fefe12d9b71086f954c71 Author: Horea Christian <chr <AT> chymera <DOT> eu> AuthorDate: Sun Sep 27 22:35:48 2020 +0000 Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> CommitDate: Sun Sep 27 22:43:20 2020 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=1a7addf4
sci-biology/Atlas2: removed discontinued package Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr <AT> chymera.eu> sci-biology/Atlas2/Atlas2-1.4.3.ebuild | 40 ---------------------------------- sci-biology/Atlas2/metadata.xml | 21 ------------------ 2 files changed, 61 deletions(-) diff --git a/sci-biology/Atlas2/Atlas2-1.4.3.ebuild b/sci-biology/Atlas2/Atlas2-1.4.3.ebuild deleted file mode 100644 index 2305fb15d..000000000 --- a/sci-biology/Atlas2/Atlas2-1.4.3.ebuild +++ /dev/null @@ -1,40 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -USE_RUBY="ruby22 ruby23 ruby24" - -inherit ruby-fakegem - -DESCRIPTION="Variant analysis tools from whole exome capture sequencing (WECS)" -HOMEPAGE="https://www.hgsc.bcm.edu/software/atlas2"; -SRC_URI="http://downloads.sourceforge.net/project/atlas2/Atlas2_v1.4.3.zip"; - -LICENSE="BSD" -SLOT="0" -KEYWORDS="" -IUSE="" - -DEPEND=" - sci-biology/samtools:0 - sci-biology/blat - sci-biology/phrap - sci-biology/ucsc-genome-browser" # that provides bigWig.h and jkweb.a, aka Jim Kent's src -RDEPEND="${DEPEND}" - -S="${WORKDIR}"/all/"${PN}"_v"${PV}" - -src_compile(){ - cd SOLiD-SNP-caller || die - default - - cd ../vcfPrinter || die - # TODO: install the *.rb files - - cd ../Atlas-Indel2 || die - # TODO: install the *.rb and files in lib/ - - cd ../Atlas-SNP2 || die - # TODO: install -} diff --git a/sci-biology/Atlas2/metadata.xml b/sci-biology/Atlas2/metadata.xml deleted file mode 100644 index 7ce5225f5..000000000 --- a/sci-biology/Atlas2/metadata.xml +++ /dev/null @@ -1,21 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> - <longdescription> -Atlas2 is a next-generation sequencing suite of variant analysis -tools specializing in the separation of true SNPs and insertions -and deletions (indels) from sequencing and mapping errors in Whole -Exome Capture Sequencing (WECS) data. -</longdescription> - <upstream> - <remote-id type="sourceforge">downloads</remote-id> - </upstream> -</pkgmetadata>
