commit: ae508e533a7c8d143dbee04f123f5e71b94c6b4a Author: Horea Christian <chr <AT> chymera <DOT> eu> AuthorDate: Sun Sep 27 22:34:55 2020 +0000 Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> CommitDate: Sun Sep 27 22:43:20 2020 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ae508e53
sci-biology/Atlas: removed discontinued package Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr <AT> chymera.eu> sci-biology/Atlas/Atlas-2005.ebuild | 40 ------------------------------------- sci-biology/Atlas/metadata.xml | 12 ----------- 2 files changed, 52 deletions(-) diff --git a/sci-biology/Atlas/Atlas-2005.ebuild b/sci-biology/Atlas/Atlas-2005.ebuild deleted file mode 100644 index cfe09e0f7..000000000 --- a/sci-biology/Atlas/Atlas-2005.ebuild +++ /dev/null @@ -1,40 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit toolchain-funcs - -DESCRIPTION="Atlas Whole Genome Assembly Suite" -HOMEPAGE="https://www.hgsc.bcm.edu/software/atlas-whole-genome-assembly-suite"; -SRC_URI="https://www.hgsc.bcm.edu/sites/default/files/software/Atlas/atlas-src.tgz"; -# https://www.hgsc.bcm.edu/sites/default/files/software/Atlas/atlas2005-linux.tgz - -LICENSE="ATLAS" -SLOT="0" -KEYWORDS="" -IUSE="" - -DEPEND="dev-libs/boost" -RDEPEND="${DEPEND}" - -S="${WORKDIR}"/atlas-src/CBT - -src_prepare(){ - sed -e "s/^CC = .*/CC = $(tc-getCC)/" -e "s/^GCC = .*/GCC = $(tc-getCXX)/" -i Makefile || die - sed -e "s/^CC = .*/CC = $(tc-getCC)/" -e "s/^GCC = .*/GCC = $(tc-getCXX)/" -i ../CBTApps/Makefile.in || die - sed -e "s@^# CBT_DEVEL_USER = .*@CBT_DEVEL_USER = ${EPREFIX}/@" -i Makefile || die - sed -e "s@^# CBT_DEVEL_USER = .*@CBT_DEVEL_USER = ${EPREFIX}/@" -i Makefile.in || die - sed -e "s#^CBT_INSTALL_LIB = /home/hgsc/lib/#CBT_INSTALL_LIB = ${EPREFIX}/usr/lib/#" -i Makefile || die - sed -e "s#^CBT_INSTALL_LIB = /home/hgsc/lib/#CBT_INSTALL_LIB = ${EPREFIX}/usr/lib/#" -i Makefile.in || die - sed -e "s#^BOOST_DIR = .*#BOOST_DIR = ${EPREFIX}/usr/lib/#" -i Makefile || die - sed -e "s#^BOOST_DIR = .*#BOOST_DIR = ${EPREFIX}/usr/lib/#" -i Makefile.in || die - sed -e "s#^CXX = .*#CXX = $(tc-getCXX)#" -i gzstream/Makefile || die -} - -src_compile(){ - # install headers, bins and libs into CBT_DEVEL_USER, then compile apps - emake CBT_DEVEL_DIR="${WORKDIR}/atlas-src/CBT" CBT_INSTALL_DIR="${D}"/"${EPREFIX}" - cd ../CBTApps || die - emake CBT_DEVEL_DIR="${WORKDIR}/atlas-src/CBTApps" CBT_INSTALL_DIR="${D}"/"${EPREFIX}" -} diff --git a/sci-biology/Atlas/metadata.xml b/sci-biology/Atlas/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/sci-biology/Atlas/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata>
