commit: d6d5fc59399df2b7cf9a4d1b5033248fabc2031b Author: Horea Christian <chr <AT> chymera <DOT> eu> AuthorDate: Sun Sep 27 10:42:30 2020 +0000 Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> CommitDate: Sun Sep 27 10:42:30 2020 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d6d5fc59
sci-biology/fgap-bin: removed discontinued package Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr <AT> chymera.eu> sci-biology/fgap-bin/fgap-bin-1.8.1.ebuild | 34 ------------------------------ sci-biology/fgap-bin/metadata.xml | 15 ------------- 2 files changed, 49 deletions(-) diff --git a/sci-biology/fgap-bin/fgap-bin-1.8.1.ebuild b/sci-biology/fgap-bin/fgap-bin-1.8.1.ebuild deleted file mode 100644 index 40bd3b93c..000000000 --- a/sci-biology/fgap-bin/fgap-bin-1.8.1.ebuild +++ /dev/null @@ -1,34 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -DESCRIPTION="Tool to close gaps in de novo assembled contigs or scaffolds" -HOMEPAGE="http://www.bioinfo.ufpr.br/fgap"; -SRC_URI="https://sourceforge.net/projects/fgap/files/FGAP_1_8_1_LINUX64b.tar.gz"; -# http://bmcresnotes.biomedcentral.com/articles/10.1186/1756-0500-7-371 - -LICENSE="MIT" -SLOT="0" -KEYWORDS="" -IUSE="" - -# Matlab (R2012a) or Octave (3.6.2) -# fag from sci-biology/fgap-bin needs /usr/local/MATLAB/R2012a/bin/glnx86/libmwi18n.so, which comes from MATLAB -# export LD_LIBRARY_PATH= /usr/local/MATLAB/R2012a/bin/glnx86 -# -# Source code (Octave/Matlab): https://sourceforge.net/projects/fgap/files/fgap.m - -# MATLAB Component Runtime v7.17: https://sourceforge.net/projects/fgap/files/MCR_LINUX64b.tar.gz -# http://www.mathworks.com/products/compiler/mcr/index.html -DEPEND="" -RDEPEND="${DEPEND} - sci-biology/ncbi-tools++" -S="${WORKDIR}"/FGAP_1_8_1_LINUX64b - -src_install(){ - dobin run_fgap.sh fgap - dodoc README - insinto /usr/share/"${PN}"/sample_data - doins sample_data/*.fasta -} diff --git a/sci-biology/fgap-bin/metadata.xml b/sci-biology/fgap-bin/metadata.xml deleted file mode 100644 index b53e13d28..000000000 --- a/sci-biology/fgap-bin/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="sourceforge">fgap</remote-id> - </upstream> -</pkgmetadata>
