commit: ecf1b90b64015fb2b9c1684c7ddd1c3b98fc01e1 Author: Horea Christian <chr <AT> chymera <DOT> eu> AuthorDate: Sun Sep 27 09:18:53 2020 +0000 Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> CommitDate: Sun Sep 27 09:18:53 2020 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ecf1b90b
sci-biology/ampliconnoise: removed discontinued package Package-Manager: Portage-3.0.8, Repoman-3.0.1 Signed-off-by: Horea Christian <chr <AT> chymera.eu> .../ampliconnoise/ampliconnoise-1.27.ebuild | 43 ---------------------- sci-biology/ampliconnoise/metadata.xml | 12 ------ 2 files changed, 55 deletions(-) diff --git a/sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild b/sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild deleted file mode 100644 index 5555cf4c6..000000000 --- a/sci-biology/ampliconnoise/ampliconnoise-1.27.ebuild +++ /dev/null @@ -1,43 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -DESCRIPTION="Noise removal from pyrosequenced amplicons" -HOMEPAGE="http://code.google.com/p/ampliconnoise/"; -SRC_URI=" - http://ampliconnoise.googlecode.com/files/AmpliconNoiseV${PV}.tar.gz - http://ampliconnoise.googlecode.com/files/TutorialV1.22.tar.gz - http://ampliconnoise.googlecode.com/files/DiversityEstimates.tar.gz"; - -LICENSE="LGPL-3" -SLOT="0" -KEYWORDS="" -IUSE="mpi" -RDEPEND=" - mpi? ( virtual/mpi ) - sci-libs/gsl - sci-biology/mafft - sci-biology/usearch-bin - dev-haskell/biosff || ( sci-biology/flower )" - # sci-biology/flower::haskell installs renamed binaries to avoid file collision - # unfortunately flower executable from the two packages - # dev-haskell/biosff::science vs. sci-biology/flower::haskell - # do not offer same cmdline options (upstream did not sync the two packages) - -S="${WORKDIR}/AmpliconNoiseV1.27" - -src_compile(){ - # FIXME: the Makefile forcibly calls 'mpicc' - emake - cd ../DiversityEstimates || die - emake -} - -src_install(){ - default - dodoc "${WORKDIR}"/TutorialV1.22/Tutorial.ppt "${WORKDIR}"/TutorialV1.22/SmallTwins.* Doc.pdf - mv bin "${DESTDIR}/${EPREFIX}"/usr/ || die - insinto /usr/share/"${PN}"/scripts - doins Scripts/*.pl Scripts/*.sh -} diff --git a/sci-biology/ampliconnoise/metadata.xml b/sci-biology/ampliconnoise/metadata.xml deleted file mode 100644 index 138cb7705..000000000 --- a/sci-biology/ampliconnoise/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata>
