commit: 221ac1978b41330a43e2f208e6cf5dd798a04357 Author: Aisha Tammy <gentoo <AT> aisha <DOT> cc> AuthorDate: Tue Sep 22 14:32:32 2020 +0000 Commit: Aisha Tammy <gentoo <AT> aisha <DOT> cc> CommitDate: Tue Sep 22 14:33:22 2020 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=221ac197
sci-mathematics/ripser: fast persistent homology Closes: https://github.com/gentoo/sci/pull/956 Package-Manager: Portage-3.0.7, Repoman-3.0.1 Signed-off-by: Aisha Tammy <gentoo <AT> aisha.cc> sci-mathematics/ripser/files/ripser-Makefile.patch | 50 ++++++++++++++++++++++ sci-mathematics/ripser/metadata.xml | 16 +++++++ sci-mathematics/ripser/ripser-1.1.ebuild | 29 +++++++++++++ 3 files changed, 95 insertions(+) diff --git a/sci-mathematics/ripser/files/ripser-Makefile.patch b/sci-mathematics/ripser/files/ripser-Makefile.patch new file mode 100644 index 000000000..bea35a39e --- /dev/null +++ b/sci-mathematics/ripser/files/ripser-Makefile.patch @@ -0,0 +1,50 @@ +diff --git a/Makefile b/Makefile +index ab410bd..cb0a1c1 100644 +--- a/Makefile ++++ b/Makefile +@@ -1,18 +1,37 @@ +-build: ripser ++TARGET = ripser + ++DESTDIR ?= + +-all: ripser ripser-coeff ripser-debug ++prefix ?= /usr/local ++exec_prefix ?= $(prefix) ++bindir ?= $(exec_prefix)/bin + ++CFLAGS += -std=c++11 -Wall -Wextra -Wpedantic -Wstrict-overflow ++ ++ifeq ($(INDICATE_PROGRESS),1) ++ CFLAGS += -D INDICATE_PROGRESS ++endif ++ ++ifeq ($(USE_GOOGLE_HASHMAP),1) ++ CFLAGS += -D USE_GOOGLE_HASHMAP ++endif ++ ++ifeq ($(NDEBUG),1) ++ CFLAGS += -D NDEBUG ++endif ++ ++build: all ++ ++all: ripser ripser-coeff + + ripser: ripser.cpp +- c++ -std=c++11 -Wall ripser.cpp -o ripser -Ofast -D NDEBUG ++ $(CXX) $(CFLAGS) $(CXXFLAGS) ripser.cpp -o ripser + + ripser-coeff: ripser.cpp +- c++ -std=c++11 -Wall ripser.cpp -o ripser-coeff -Ofast -D NDEBUG -D USE_COEFFICIENTS +- +-ripser-debug: ripser.cpp +- c++ -std=c++11 -Wall ripser.cpp -o ripser-debug -g ++ $(CXX) $(CFLAGS) $(CXXFLAGS) -D USE_COEFFICIENTS ripser.cpp -o ripser-coeff + ++install: all ++ install -m 755 ripser ripser-coeff $(bindir) + + clean: +- rm -f ripser ripser-coeff ripser-debug ++ rm -f ripser ripser-coeff diff --git a/sci-mathematics/ripser/metadata.xml b/sci-mathematics/ripser/metadata.xml new file mode 100644 index 000000000..49165d3bd --- /dev/null +++ b/sci-mathematics/ripser/metadata.xml @@ -0,0 +1,16 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>[email protected]</email> + <name>Aisha Tammy</name> + </maintainer> + <maintainer type="project"> + <email>[email protected]</email> + <name>Proxy Maintainers</name> + </maintainer> + <use> + <flag name="progress">print progress of calculations in console</flag> + <flag name="sparsehash">use google sparsehash for storage</flag> + </use> +</pkgmetadata> diff --git a/sci-mathematics/ripser/ripser-1.1.ebuild b/sci-mathematics/ripser/ripser-1.1.ebuild new file mode 100644 index 000000000..0b227a955 --- /dev/null +++ b/sci-mathematics/ripser/ripser-1.1.ebuild @@ -0,0 +1,29 @@ +# Copyright 2019-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +DESCRIPTION="efficient computation of vietoris-rips persistence barcodes" +HOMEPAGE="https://ripser.org"; +SRC_URI="https://github.com/Ripser/ripser/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +KEYWORDS="~amd64" + +LICENSE="MIT" +SLOT="0" +IUSE="debug progress sparsehash" + +BDEPEND=" + sparsehash? ( dev-cpp/sparsehash ) +" + +PATCHES=( + "${FILESDIR}/ripser-Makefile.patch" +) + +src_compile() { + emake USE_GOOGLE_HASHMAP=$(usex sparsehash 1 0) \ + INDICATE_PROGRESS=$(usex progress 1 0) \ + NDEBUG=$(usex debug 0 1)\ + all +}
