commit: 3b6605165f97987a79ac9103821765e835af4d17
Author: Aisha Tammy <gentoo <AT> aisha <DOT> cc>
AuthorDate: Tue Sep 22 00:17:04 2020 +0000
Commit: Aisha Tammy <gentoo <AT> aisha <DOT> cc>
CommitDate: Tue Sep 22 14:11:41 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3b660516
sci-biology/cutadapt: update to latest
Package-Manager: Portage-3.0.7, Repoman-3.0.1
Signed-off-by: Aisha Tammy <gentoo <AT> aisha.cc>
sci-biology/cutadapt/cutadapt-2.10.ebuild | 42 +++++++++++++++++++++++++++++++
sci-biology/cutadapt/metadata.xml | 4 +++
2 files changed, 46 insertions(+)
diff --git a/sci-biology/cutadapt/cutadapt-2.10.ebuild
b/sci-biology/cutadapt/cutadapt-2.10.ebuild
new file mode 100644
index 000000000..e21219dd8
--- /dev/null
+++ b/sci-biology/cutadapt/cutadapt-2.10.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{6..9} )
+
+inherit distutils-r1
+
+DESCRIPTION="Remove adapter sequences from high-throughput sequencing data"
+HOMEPAGE="https://github.com/marcelm/cutadapt";
+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+
+DEPEND="
+ dev-python/dnaio[${PYTHON_USEDEP}]
+ dev-python/xopen[${PYTHON_USEDEP}]
+"
+RDEPEND="
+ ${PYTHON_DEPS}
+ ${DEPEND}
+"
+BDEPEND="
+ test? (
+ dev-python/cython
+ dev-python/pytest-mock
+ dev-python/pytest-timeout
+ dev-python/sphinx
+ dev-python/sphinx-issues
+ )
+"
+
+distutils_enable_tests pytest
+
+# needs call to installed cutadapt executable
+python_test() {
+ distutils_install_for_testing
+ pytest -vv || die "pytest failed with ${EPYTHON}"
+}
diff --git a/sci-biology/cutadapt/metadata.xml
b/sci-biology/cutadapt/metadata.xml
index 6099a3fab..6a2aeb852 100644
--- a/sci-biology/cutadapt/metadata.xml
+++ b/sci-biology/cutadapt/metadata.xml
@@ -5,6 +5,10 @@
<email>[email protected]</email>
<name>Martin Mokrejs</name>
</maintainer>
+ <maintainer type="person">
+ <email>[email protected]</email>
+ <name>Aisha Tammy</name>
+ </maintainer>
<maintainer type="project">
<email>[email protected]</email>
<name>Gentoo Biology Project</name>
