commit: 8fb8cfaa6351d528ef9180702942e213088337ce Author: Michał Górny <mgorny <AT> gentoo <DOT> org> AuthorDate: Mon Sep 21 14:02:28 2020 +0000 Commit: Michał Górny <mgorny <AT> gentoo <DOT> org> CommitDate: Mon Sep 21 14:04:18 2020 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8fb8cfaa
sci-chemistry/openbabel-python: Remove last-rited pkg Closes: https://bugs.gentoo.org/718482 Signed-off-by: Michał Górny <mgorny <AT> gentoo.org> profiles/package.mask | 1 - sci-chemistry/openbabel-python/Manifest | 1 - ...enbabel-python-2.3.2-gcc-6_and_7-backport.patch | 13 ---- sci-chemistry/openbabel-python/metadata.xml | 18 ----- .../openbabel-python-2.4.1-r1.ebuild | 91 ---------------------- 5 files changed, 124 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index 64c9355340f..52fa22c89ad 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -631,7 +631,6 @@ net-fs/s3ql net-misc/dmr_utils sci-chemistry/ParmEd sci-chemistry/freeon -sci-chemistry/openbabel-python # Alfredo Tupone <[email protected]> (2020-08-16) # Ported to py3.8 but not yet released diff --git a/sci-chemistry/openbabel-python/Manifest b/sci-chemistry/openbabel-python/Manifest deleted file mode 100644 index ac268758e8c..00000000000 --- a/sci-chemistry/openbabel-python/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST openbabel-2.4.1.tar.gz 11618304 BLAKE2B 8fc051e83add9be6456e281a109bd6bbec282a64ffc83309819f0decbf167b4914fbb7f1966e95e103f268754045b804317f51c79a952ace707c6af2bd320125 SHA512 427e678f0a911bd27b9a8a05e60b6e09f113be4e5dd180daaf80c28d06368e52b57501261755ab3817a8d31f2754db24471fd0ceee706d029386d6f70800e9c6 diff --git a/sci-chemistry/openbabel-python/files/openbabel-python-2.3.2-gcc-6_and_7-backport.patch b/sci-chemistry/openbabel-python/files/openbabel-python-2.3.2-gcc-6_and_7-backport.patch deleted file mode 100644 index 1624262e698..00000000000 --- a/sci-chemistry/openbabel-python/files/openbabel-python-2.3.2-gcc-6_and_7-backport.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff --git a/CMakeLists.txt b/CMakeLists.txt -index 0ee545cf..7f4b944e 100755 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -239,7 +239,7 @@ check_type_size(clock_t CLOCK_T) - # Get the GCC version - from KDE4 cmake files - if(CMAKE_COMPILER_IS_GNUCXX) - exec_program(${CMAKE_C_COMPILER} ARGS --version OUTPUT_VARIABLE _gcc_version_info) -- string(REGEX MATCH "[345]\\.[0-9]\\.[0-9]" _gcc_version "${_gcc_version_info}") -+ string(REGEX MATCH "[3456789]\\.[0-9]\\.[0-9]" _gcc_version "${_gcc_version_info}") - # gcc on mac just reports: "gcc (GCC) 3.3 20030304 ..." without the - # patch level, handle this here: - if (NOT _gcc_version) diff --git a/sci-chemistry/openbabel-python/metadata.xml b/sci-chemistry/openbabel-python/metadata.xml deleted file mode 100644 index 06fa4d2398d..00000000000 --- a/sci-chemistry/openbabel-python/metadata.xml +++ /dev/null @@ -1,18 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Chemistry Project</name> - </maintainer> - <longdescription> -OpenBabel is a chemical toolbox designed to speak the many languages of -chemical data. It's an open, collaborative project allowing anyone to -search, convert, analyze, or store data from molecular modeling, chemistry, -solid-state materials, biochemistry, or related areas. This package enables -to access OpenBabel library from Python programs. -</longdescription> - <upstream> - <remote-id type="sourceforge">openbabel</remote-id> - </upstream> -</pkgmetadata> diff --git a/sci-chemistry/openbabel-python/openbabel-python-2.4.1-r1.ebuild b/sci-chemistry/openbabel-python/openbabel-python-2.4.1-r1.ebuild deleted file mode 100644 index fe6933bd986..00000000000 --- a/sci-chemistry/openbabel-python/openbabel-python-2.4.1-r1.ebuild +++ /dev/null @@ -1,91 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python3_6 ) - -inherit cmake-utils python-r1 - -DESCRIPTION="Python bindings for OpenBabel (including Pybel)" -HOMEPAGE="http://openbabel.sourceforge.net/"; -SRC_URI="mirror://sourceforge/openbabel/openbabel-${PV}.tar.gz" - -KEYWORDS="amd64 ~arm x86 ~amd64-linux ~x86-linux" -SLOT="0/5" -LICENSE="GPL-2" -IUSE="" - -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -RDEPEND="${PYTHON_DEPS} - ~sci-chemistry/openbabel-${PV} - sys-libs/zlib" -DEPEND="${RDEPEND} - >=dev-lang/swig-2" - -S="${WORKDIR}"/openbabel-${PV} - -PATCHES=( - "${FILESDIR}"/${PN}-2.3.2-gcc-6_and_7-backport.patch - ) - -src_prepare() { - cmake-utils_src_prepare - sed \ - -e "s:\"\.\.\":\"${EPREFIX}/usr\":g" \ - -i test/testbabel.py || die - swig -python -c++ -small -O -templatereduce -naturalvar \ - -I"${EPREFIX}/usr/include/openbabel-2.0" \ - -o scripts/python/openbabel-python.cpp \ - -DHAVE_EIGEN \ - -outdir scripts/python \ - scripts/openbabel-python.i \ - || die "Regeneration of openbabel-python.cpp failed" - sed \ - -e '/__GNUC__/s:== 4:>= 4:g' \ - -i include/openbabel/shared_ptr.h || die -} - -src_configure() { - my_impl_src_configure() { - local mycmakeargs=( - -DCMAKE_INSTALL_RPATH= - -DBINDINGS_ONLY=ON - -DBABEL_SYSTEM_LIBRARY="${EPREFIX}/usr/$(get_libdir)/libopenbabel.so" - -DOB_MODULE_PATH="${EPREFIX}/usr/$(get_libdir)/openbabel/${PV}" - -DLIB_INSTALL_DIR="${D}$(python_get_sitedir)" - -DPYTHON_BINDINGS=ON - -DPYTHON_EXECUTABLE=${PYTHON} - -DPYTHON_INCLUDE_DIR="$(python_get_includedir)" - -DPYTHON_INCLUDE_PATH="$(python_get_includedir)" - -DPYTHON_LIBRARY="$(python_get_library_path)" - -DENABLE_TESTS=ON - -DCMAKE_INSTALL_PREFIX="${ED%/}/usr" - ) - - cmake-utils_src_configure - } - - python_foreach_impl my_impl_src_configure -} - -src_compile() { - python_foreach_impl cmake-utils_src_make bindings_python -} - -src_test() { - python_foreach_impl cmake-utils_src_test -R py -} - -src_install() { - my_impl_src_install() { - cd "${BUILD_DIR}" || die - - cmake -DCOMPONENT=bindings_python -P cmake_install.cmake - - python_optimize - } - - python_foreach_impl my_impl_src_install -}
