axs 14/08/26 19:37:47 Modified: ChangeLog Added: Bio-SamTools-1.390.0-r1.ebuild Removed: Bio-SamTools-1.390.0.ebuild Log: bumped EAPI to 5 to help with dev-lang/perl upgrade (Portage version: 2.2.8-r1/cvs/Linux x86_64, signed Manifest commit with key 2B6559ED)
Revision Changes Path 1.14 dev-perl/Bio-SamTools/ChangeLog file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?rev=1.14&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?rev=1.14&content-type=text/plain diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?r1=1.13&r2=1.14 Index: ChangeLog =================================================================== RCS file: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v retrieving revision 1.13 retrieving revision 1.14 diff -u -r1.13 -r1.14 --- ChangeLog 24 May 2014 07:37:58 -0000 1.13 +++ ChangeLog 26 Aug 2014 19:37:47 -0000 1.14 @@ -1,6 +1,12 @@ # ChangeLog for dev-perl/Bio-SamTools # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.13 2014/05/24 07:37:58 pacho Exp $ +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.14 2014/08/26 19:37:47 axs Exp $ + +*Bio-SamTools-1.390.0-r1 (26 Aug 2014) + + 26 Aug 2014; Ian Stakenvicius (_AxS_) <[email protected]> + +Bio-SamTools-1.390.0-r1.ebuild, -Bio-SamTools-1.390.0.ebuild: + bumped EAPI to 5 to help with dev-lang/perl upgrade 24 May 2014; Pacho Ramos <[email protected]> metadata.xml: Cleanup due #199047 1.1 dev-perl/Bio-SamTools/Bio-SamTools-1.390.0-r1.ebuild file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.390.0-r1.ebuild?rev=1.1&view=markup plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.390.0-r1.ebuild?rev=1.1&content-type=text/plain Index: Bio-SamTools-1.390.0-r1.ebuild =================================================================== # Copyright 1999-2014 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.390.0-r1.ebuild,v 1.1 2014/08/26 19:37:47 axs Exp $ EAPI=5 MODULE_AUTHOR=LDS MODULE_VERSION=1.39 inherit perl-module DESCRIPTION="Read SAM/BAM database files" SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="" RDEPEND="sci-biology/bioperl >=sci-biology/samtools-0.1.16" DEPEND="${RDEPEND} virtual/perl-ExtUtils-CBuilder virtual/perl-Module-Build " SRC_TEST=do src_prepare() { sed \ -e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \ -e 's|my $LibFile = "libbam.a";|my $LibFile = "libbam.so";|' \ -i Build.PL || die sed \ -e 's|#include "bam.h"|#include "bam/bam.h"|' \ -e 's|#include "sam.h"|#include "bam/sam.h"|' \ -e 's|#include "khash.h"|#include "bam/khash.h"|' \ -e 's|#include "faidx.h"|#include "bam/faidx.h"|' \ -i lib/Bio/DB/Sam.xs c_bin/bam2bedgraph.c || die perl-module_src_prepare }
