commit: 422ca7a3d7fbb0f7e0a63a4f19934281226dcc49
Author: David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sat Aug 22 12:06:34 2020 +0000
Commit: David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sat Aug 22 12:06:34 2020 +0000
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=422ca7a3
sci-biology/biopython: Remove old 1.73
Package-Manager: Portage-3.0.4, Repoman-3.0.1
Signed-off-by: David Seifert <soap <AT> gentoo.org>
sci-biology/biopython/Manifest | 1 -
sci-biology/biopython/biopython-1.73.ebuild | 57 -----------------------------
2 files changed, 58 deletions(-)
diff --git a/sci-biology/biopython/Manifest b/sci-biology/biopython/Manifest
index cff73fbcbc3..420f6d1f83d 100644
--- a/sci-biology/biopython/Manifest
+++ b/sci-biology/biopython/Manifest
@@ -1,2 +1 @@
-DIST biopython-1.73.tar.gz 15715102 BLAKE2B
b2c40f9ed02681f19607c88f91b469784985acefc6e81770a54e5c13c715915344bc7fd72e4a88ae50879a2463965ac6d0d04c6d263908887028d1e065620b95
SHA512
d067330ef8e25ca6881b56f4e5e89e16a816c89760473e2f32a6236ab202f805294650aa944f0b098987425bcb65727317da7a26deb4d4937f02b00123ea9a8f
DIST biopython-1.77.tar.gz 16837021 BLAKE2B
b5586f0ea3e476b11801dcc98039d5eea7b191e11d390192c0cf348018ded005fe2ad5dc9ba71c83aebc9cdde20c97244905dcc3aeb5436a97588da9f8c79c3e
SHA512
6f4b03d46c591e1f49dd1e76bcc4ac5c9aaa2bf748c9dd37ffc5de5a613fbeed38f89b418c01601dd99c65b13b2e294bc8d81ffafc42a9ff1b309c84f840d0d5
diff --git a/sci-biology/biopython/biopython-1.73.ebuild
b/sci-biology/biopython/biopython-1.73.ebuild
deleted file mode 100644
index 94acdfc2a2c..00000000000
--- a/sci-biology/biopython/biopython-1.73.ebuild
+++ /dev/null
@@ -1,57 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{6,7} )
-inherit distutils-r1 eutils
-
-DESCRIPTION="Python modules for computational molecular biology"
-HOMEPAGE="https://www.biopython.org/ https://pypi.org/project/biopython/";
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
-
-LICENSE="HPND"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
- dev-python/matplotlib[${PYTHON_USEDEP}]
- dev-python/networkx[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/rdflib[${PYTHON_USEDEP}]
- dev-python/pygraphviz[${PYTHON_USEDEP}]
- >=dev-python/reportlab-3.5.13-r1[${PYTHON_USEDEP}]
- dev-python/pydot[${PYTHON_USEDEP}]"
-DEPEND="${RDEPEND}
- dev-python/setuptools[${PYTHON_USEDEP}]
- sys-devel/flex"
-
-DOCS=( {CONTRIB,DEPRECATED,NEWS,README}.rst Doc/. )
-
-python_test() {
- distutils_install_for_testing
- cp -r "${S}"/{Doc,Tests} "${TEST_DIR}"/lib/ || die
- cd "${TEST_DIR}"/lib/Tests || die
- rm test_BioSQL_{psycopg2.py,MySQLdb.py,mysql_connector.py} || die
- "${EPYTHON}" run_tests.py --offline --verbose || die
-}
-
-python_install_all() {
- # remove files causing ecompressdir to fail
- rm Doc/examples/ls_orchid.gbk.{gz,bz2} || die
-
- distutils-r1_python_install_all
-
- dodir /usr/share/${PN}
- cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die
-}
-
-pkg_postinst() {
- elog "For database support you need to install:"
- optfeature "MySQL" dev-python/mysql-python
- optfeature "PostgreSQL" dev-python/psycopg
-
- elog "Some applications need extra packages:"
- optfeature "EMBOSS (The European Molecular Biology Open Software
Suite)" sci-biology/emboss
-}
