commit: ae5eb7ca6ede7e8579ade25afb8eb005c62ee35a
Author: Martin Mokrejs <mmokrejs <AT> gmail <DOT> com>
AuthorDate: Wed May 6 17:44:42 2020 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed May 6 17:44:49 2020 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ae5eb7ca
sci-biology/pybedtools: update homepage, explicitly run cythonize
Package-Manager: Portage-2.3.95, Repoman-2.3.22
Signed-off-by: Martin Mokrejs <mmokrejs <AT> gmail.com>
sci-biology/pybedtools/pybedtools-0.8.0.ebuild | 13 ++++++++++---
1 file changed, 10 insertions(+), 3 deletions(-)
diff --git a/sci-biology/pybedtools/pybedtools-0.8.0.ebuild
b/sci-biology/pybedtools/pybedtools-0.8.0.ebuild
index d817a594f..cd444a09e 100644
--- a/sci-biology/pybedtools/pybedtools-0.8.0.ebuild
+++ b/sci-biology/pybedtools/pybedtools-0.8.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
@@ -8,7 +8,7 @@ PYTHON_COMPAT=( python2_7 python3_{5,6,7,8} )
inherit distutils-r1
DESCRIPTION="Use BED and GFF files from python using BEDtools"
-HOMEPAGE="http://pythonhosted.org/pybedtools/";
+HOMEPAGE="https://daler.github.io/pybedtools";
SRC_URI="https://github.com/daler/pybedtools/archive/v${PV}.tar.gz ->
${P}.tar.gz"
LICENSE="MIT"
@@ -16,6 +16,13 @@ SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE=""
-RDEPEND="sci-biology/bedtools"
+RDEPEND="
+ sci-biology/bedtools
+ sci-biology/pysam"
DEPEND="${RDEPEND}
dev-python/cython[${PYTHON_USEDEP}]"
+
+src_compile(){
+ python setup.py cythonize
+ default
+}
