commit: 08a272766f1feb9206762a4c51839c55a9c7637d Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Mon Dec 30 15:20:32 2019 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Mon Dec 30 15:20:32 2019 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=08a27276
sci-libs/libmaus2: version bump to 2.0.689 Package-Manager: Portage-2.3.75, Repoman-2.3.17 Signed-off-by: Martin Mokrejs <mmokrejs <AT> fold.natur.cuni.cz> sci-libs/libmaus2/libmaus2-2.0.689.ebuild | 45 +++++++++++++++++++++++++++++++ 1 file changed, 45 insertions(+) diff --git a/sci-libs/libmaus2/libmaus2-2.0.689.ebuild b/sci-libs/libmaus2/libmaus2-2.0.689.ebuild new file mode 100644 index 000000000..50b82d5aa --- /dev/null +++ b/sci-libs/libmaus2/libmaus2-2.0.689.ebuild @@ -0,0 +1,45 @@ +# Copyright 2019 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit autotools + +release_data="20191120141844" +DESCRIPTION="Library for biobambam2" +HOMEPAGE="https://github.com/gt1/libmaus"; +SRC_URI="https://gitlab.com/german.tischler/${PN}/-/archive/${PV}-release-${release_data}/${P}-release-${release_data}.tar.gz -> ${P}.tar.gz" + +LICENSE="BSD-2 GPL-2 GPL-3 MIT ZLIB" # BUG: incomplete list of licenses, see AUTHORS +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="cpu_flags_x86_ssse3 cpu_flags_x86_sse4_1 cpu_flags_x86_sse4_2" + +DEPEND=" + !sci-libs/libmaus + >=sci-libs/io_lib-1.14.11 + app-arch/snappy + sci-libs/fftw + sci-libs/hdf5 + net-libs/gnutls + dev-libs/nettle" +# --with-daligner +# --with-irods +# old github.com release tarballs +# S="${WORKDIR}"/libmaus2-master-27828cd78121d5e4b19c263c5527e462360f5901 +# current gitlab.com release tarballs +S="${WORKDIR}/${P}-release-${release_data}" + +src_configure(){ + local CONFIG_OPTS + use cpu_flags_x86_ssse3 && CONFIG_OPTS+=( --enable-ssse3 ) + ( use cpu_flags_x86_sse4_1 || use cpu_flags_x86_sse4_2 ) && CONFIG_OPTS+=( --enable-sse4 ) + econf --with-snappy --with-io_lib $CONFIG_OPTS \ + --with-lzma --with-gnutls --with-nettle --with-hdf5 --with-gmp --with-fftw +} + +pkg_postinst(){ + einfo "The io_lib, snappy dependencies are not strictly needed" + einfo "but were forced for optimal libmaus2 performance." + einfo "igzip is only used if gzip level is set to 11." +}
