commit: d0ba0e33274628d86bfa3ace5efc31c0821487cd Author: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org> AuthorDate: Tue Oct 29 09:09:25 2019 +0000 Commit: Alexey Shvetsov <alexxy <AT> gentoo <DOT> org> CommitDate: Tue Oct 29 09:09:25 2019 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=d0ba0e33
sci-chemistry/MotionCor2: Add motioncor2 Package-Manager: Portage-2.3.78, Repoman-2.3.17 Signed-off-by: Alexey Shvetsov <alexxy <AT> gentoo.org> sci-chemistry/MotionCor2/MotionCor2-1.2.6.ebuild | 49 ++++++++++++++++++++++++ sci-chemistry/MotionCor2/metadata.xml | 16 ++++++++ 2 files changed, 65 insertions(+) diff --git a/sci-chemistry/MotionCor2/MotionCor2-1.2.6.ebuild b/sci-chemistry/MotionCor2/MotionCor2-1.2.6.ebuild new file mode 100644 index 000000000..8fae639a3 --- /dev/null +++ b/sci-chemistry/MotionCor2/MotionCor2-1.2.6.ebuild @@ -0,0 +1,49 @@ +# Copyright 2019 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +DESCRIPTION="Correction of electron beam-induced sample motion" +HOMEPAGE="https://emcore.ucsf.edu/ucsf-motioncor2"; +SRC_URI="${PN}_${PV}.zip" + +LICENSE="UCSF-Motioncor2" +SLOT="0" +KEYWORDS="~amd64" +IUSE="cuda92 +cuda101" + +DEPEND=" + cuda92? ( =dev-util/nvidia-cuda-toolkit-9.2* ) + cuda101? ( =dev-util/nvidia-cuda-toolkit-10.1* ) + media-libs/tiff + app-arch/xz-utils + || ( media-libs/jpeg:62 media-libs/libjpeg-turbo ) +" +RDEPEND="${DEPEND}" +BDEPEND="" + +REQUIRED_USE="^^ ( cuda92 cuda101 )" + +RESTRICT="fetch" +VERSION="MotionCor2 v1.2.6 (05-22.2019, Linux) now Cuda v8.0,9.2,10.1" + +S="${WORKDIR}" + +pkg_nofetch() { + echo + elog "Please download ${PN}_${PV}.zip from" + elog "${HOMEPAGE}." + elog "Be sure to select the version ${VERSION} tarball!!" + elog "Then move the tarball to" + elog "${DISTDIR}/${P}.tar.gz" + echo +} + +src_install() { + dodoc MotionCor2-UserManual-09-13-2018.pdf + if use cuda92; then + newbin MotionCor2_1.2.6-Cuda92 ${PN} + elif use cuda101; then + newbin MotionCor2_1.2.6-Cuda101 ${PN} + fi +} diff --git a/sci-chemistry/MotionCor2/metadata.xml b/sci-chemistry/MotionCor2/metadata.xml new file mode 100644 index 000000000..75c4f5d9f --- /dev/null +++ b/sci-chemistry/MotionCor2/metadata.xml @@ -0,0 +1,16 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="project"> + <email>[email protected]</email> + <name>Gentoo Chemistry Project</name> + </maintainer> + <maintainer type="person"> + <email>[email protected]</email> + <name>Alexey Shvetsov</name> + </maintainer> + <use> + <flag name="cuda92">Install cuda-9.2 version</flag> + <flag name="cuda101">Install cuda-10.1 version</flag> + </use> +</pkgmetadata>
