commit: 85c146f1b5cdc1ac126b798e40b73b180a8c57cd Author: Horea Christian <chr <AT> chymera <DOT> eu> AuthorDate: Tue Oct 8 14:43:01 2019 +0000 Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> CommitDate: Tue Oct 8 14:43:01 2019 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=85c146f1
sci-libs/spyking-circus: new package Package-Manager: Portage-2.3.76, Repoman-2.3.17 Signed-off-by: Horea Christian <chr <AT> chymera.eu> sci-libs/spyking-circus/metadata.xml | 15 ++++++++++ .../spyking-circus/spyking-circus-0.8.3.ebuild | 35 ++++++++++++++++++++++ 2 files changed, 50 insertions(+) diff --git a/sci-libs/spyking-circus/metadata.xml b/sci-libs/spyking-circus/metadata.xml new file mode 100644 index 000000000..aca30bb27 --- /dev/null +++ b/sci-libs/spyking-circus/metadata.xml @@ -0,0 +1,15 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>[email protected]</email> + <name>Horea Christian</name> + </maintainer> + <longdescription lang="en"> + SpyKING CIRCUS is a Python code to allow fast spike sorting on multi + channel recordings. A publication on the algorithm can be found at + https://elifesciences.org/articles/34518 . The software has been tested + on datasets coming from in vitro retina with 252 electrodes MEA, from in + vivo hippocampus with tetrodes, and in vivo and in vitro cortex data. + </longdescription> +</pkgmetadata> diff --git a/sci-libs/spyking-circus/spyking-circus-0.8.3.ebuild b/sci-libs/spyking-circus/spyking-circus-0.8.3.ebuild new file mode 100644 index 000000000..b5eca209c --- /dev/null +++ b/sci-libs/spyking-circus/spyking-circus-0.8.3.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2019 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 +PYTHON_COMPAT=( python2_7 python3_{5,6} ) + +inherit distutils-r1 + +DESCRIPTION="Fast and scalable spike sorting in Python" +HOMEPAGE="http://spyking-circus.rtfd.org"; +SRC_URI="https://github.com/spyking-circus/spyking-circus/archive/${PV}.tar.gz"; + +LICENSE="CeCILL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" +RESTRICT="test" + +RDEPEND=" + dev-python/mpi4py[${PYTHON_USEDEP}] + dev-python/numpy[${PYTHON_USEDEP}] + dev-python/cython[${PYTHON_USEDEP}] + sci-libs/scipy[${PYTHON_USEDEP}] + dev-python/matplotlib[${PYTHON_USEDEP}] + dev-python/h5py[${PYTHON_USEDEP}] + dev-python/colorama[${PYTHON_USEDEP}] + dev-python/psutil[${PYTHON_USEDEP}] + dev-python/tqdm[${PYTHON_USEDEP}] + dev-python/blosc[${PYTHON_USEDEP}] + dev-python/statsmodels[${PYTHON_USEDEP}] + sci-libs/scikits_learn[${PYTHON_USEDEP}] +" +DEPEND=" + dev-python/setuptools[${PYTHON_USEDEP}] +"
