commit: cb6d535b3916484987d9c531cd30c043149d797b Author: Mikle Kolyada <zlogene <AT> gentoo <DOT> org> AuthorDate: Mon Jul 22 10:06:54 2019 +0000 Commit: Mikle Kolyada <zlogene <AT> gentoo <DOT> org> CommitDate: Mon Jul 22 10:06:54 2019 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=cb6d535b
sci-biology/vaal: remove last rited package Signed-off-by: Mikle Kolyada <zlogene <AT> gentoo.org> sci-biology/vaal/Manifest | 3 -- sci-biology/vaal/files/vaal-46233-libieee.patch | 12 ------ sci-biology/vaal/metadata.xml | 8 ---- sci-biology/vaal/vaal-46233-r2.ebuild | 49 ------------------------- 4 files changed, 72 deletions(-) diff --git a/sci-biology/vaal/Manifest b/sci-biology/vaal/Manifest deleted file mode 100644 index 59235379245..00000000000 --- a/sci-biology/vaal/Manifest +++ /dev/null @@ -1,3 +0,0 @@ -DIST VAAL_manual.doc 48128 BLAKE2B cc31bcdfd4d6faa8c247a9d23a6254ac8a8f8f5de20f8d188c7ed57b9f8231920b4fc7e246394b1bb48ebf457a777d82e704b51b91feb6191e5da331e5765aa9 SHA512 4da21b6559659764e108c118773bd8ed365b67e3a22de52c7c13429979bb765e7f5d05955ce746a7a55e8d3a6baa752ad575289e71dfd7fb5b8b7207f5cff171 -DIST vaal-46233.tar.gz 1148052 BLAKE2B c3fa8ebd722e41bfa1e821d988316900a07d502b6a6b2be394b7227f269ae60a47645b45b6616a782189dcef8a1ea341265e40f257d2ee3f005e8d023273e0b6 SHA512 7a6927d06e1788411063d38e446b7e3c93192e4322a33ea652855f72e550f35debcdb970b895f1fb8504411a54d9096f3dcf506faebd33d50eb033937e15a321 -DIST vaal-46233_remove-namespace-std.patch.bz2 5879 BLAKE2B eb10f5cec8c65c12461346b151dc2c6d60a6f980cdfda78bd97bf0cc33451f808481763e5766b76a78d3d8ef6d5f2f8798bf7b8a7b605e0d32867fdaa9073e3a SHA512 4141094b68b4f9c643abf15d2c5e1486525a69b9d8762cd8034abd3e6f85726ed50d7f25edfcf88fc429ab90db288a583f14b2b5d8e6605cdbfab515f295979c diff --git a/sci-biology/vaal/files/vaal-46233-libieee.patch b/sci-biology/vaal/files/vaal-46233-libieee.patch deleted file mode 100644 index 9f5760c0cb1..00000000000 --- a/sci-biology/vaal/files/vaal-46233-libieee.patch +++ /dev/null @@ -1,12 +0,0 @@ -diff -ruN vaal-46233.orig/configure.ac vaal-46233/configure.ac ---- vaal-46233.orig/configure.ac 2018-09-29 21:58:06.059065798 +0200 -+++ vaal-46233/configure.ac 2018-09-29 22:22:35.947845554 +0200 -@@ -12,7 +12,7 @@ - AX_PTHREAD - AC_OPENMP - --CXXFLAGS="$CXXFLAGS -std=c++11 -Wextra -Wall -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -mieee-fp -fno-strict-aliasing -iquote . -DNDEBUG" -+CXXFLAGS="$CXXFLAGS -std=c++11 -Wextra -Wall -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -fno-strict-aliasing -iquote . -DNDEBUG" - - OS_RELEASE="`uname -r`" - AC_SUBST(CXXFLAGS) diff --git a/sci-biology/vaal/metadata.xml b/sci-biology/vaal/metadata.xml deleted file mode 100644 index 959160fe46b..00000000000 --- a/sci-biology/vaal/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-biology/vaal/vaal-46233-r2.ebuild b/sci-biology/vaal/vaal-46233-r2.ebuild deleted file mode 100644 index 0ac15e6ff63..00000000000 --- a/sci-biology/vaal/vaal-46233-r2.ebuild +++ /dev/null @@ -1,49 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit autotools - -DESCRIPTION="Algorithm for detecting SNPs, indels, and other polymorphisms" -HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd/"; -SRC_URI=" - ftp://ftp.broad.mit.edu/pub/crd/VAAL/latest_source_code/${P}.tar.gz - ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL_manual.doc - https://dev.gentoo.org/~mgorny/dist/${P}_remove-namespace-std.patch.bz2"; - -LICENSE="Whitehead-MIT" -SLOT="0" -KEYWORDS="amd64" -IUSE="openmp" - -RDEPEND=" - !sci-biology/allpaths - !sci-biology/allpathslg" -DEPEND=" - ${RDEPEND} - dev-libs/boost" - -DOCS=( "${DISTDIR}/VAAL_manual.doc" ) -PATCHES=( - "${FILESDIR}/${P}-libieee.patch" - "${WORKDIR}/${P}_remove-namespace-std.patch" -) - -src_prepare() { - sed \ - -e '/COPYING/d' \ - -i src/Makefile.am || die - - sed \ - -e 's:-ggdb::g' \ - -e '/AC_OPENMP_CEHCK/d' \ - -i configure.ac || die - default - eautoreconf -} - -src_configure() { - econf \ - $(use_enable openmp) -}
