commit: c7a40f0c2955843da5c85d0abbeed58351547ce1
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Jul 18 17:12:10 2019 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Jul 18 17:12:10 2019 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=c7a40f0c
sci-biology/BRAKER: version bump
New HOMEPAGE, SRC_URI, layout of .tar.gz tarball
Package-Manager: Portage-2.3.69, Repoman-2.3.16
Signed-off-by: Martin Mokrejs <mmokrejs <AT> fold.natur.cuni.cz>
.../BRAKER/{BRAKER-2.1.0.ebuild => BRAKER-2.1.2.ebuild} | 15 +++++++--------
1 file changed, 7 insertions(+), 8 deletions(-)
diff --git a/sci-biology/BRAKER/BRAKER-2.1.0.ebuild
b/sci-biology/BRAKER/BRAKER-2.1.2.ebuild
similarity index 79%
rename from sci-biology/BRAKER/BRAKER-2.1.0.ebuild
rename to sci-biology/BRAKER/BRAKER-2.1.2.ebuild
index 13d63d4b8..908e57e51 100644
--- a/sci-biology/BRAKER/BRAKER-2.1.0.ebuild
+++ b/sci-biology/BRAKER/BRAKER-2.1.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -8,9 +8,10 @@ inherit perl-module
DESCRIPTION="Gene prediction based on RNA-Seq using GeneMark-ET and AUGUSTUS"
# http://bioinf.uni-greifswald.de/bioinf/publications/pag2015.pdf
-HOMEPAGE="http://bioinf.uni-greifswald.de/bioinf/braker
+HOMEPAGE="https://github.com/Gaius-Augustus/BRAKER
+ http://bioinf.uni-greifswald.de/bioinf/braker
http://bioinf.uni-greifswald.de/augustus/downloads";
-SRC_URI="http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER_v"${PV}".tar.gz
-> ${P}.tar.gz"
+SRC_URI="https://github.com/Gaius-Augustus/BRAKER/archive/v${PV}.tar.gz ->
${P}.tar.gz"
# Example data for testing the BRAKER2 pipeline is available at
# http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER2examples.tar.gz
(1.1 GB).
@@ -29,14 +30,12 @@ RDEPEND="${DEPEND}
sci-biology/augustus"
#>=sci-biology/GeneMark_ET-bin-4.29"
-S="${WORKDIR}"/BRAKER_v"${PV}"
-
src_install(){
perl_set_version
- dobin *.pl
+ dobin scripts/*.pl
insinto ${VENDOR_LIB}/${PN}
- doins *.pm
- dodoc userguide.pdf
+ doins scripts/*.pm
+ dodoc docs/userguide.pdf
}
pkg_postinst(){
