commit: 9f62533afcb9014961a43534237d3a31a7aa4d00 Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Mon Mar 25 09:03:15 2019 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Mon Mar 25 09:03:15 2019 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=9f62533a
sci-biology/tablet-bin: version bump, ebuild cleanup Package-Manager: Portage-2.3.62, Repoman-2.3.12 Signed-off-by: Martin Mokrejs <mmokrejs <AT> fold.natur.cuni.cz> ...tablet-bin-1.16.09.06.ebuild => tablet-bin-1.17.08.17.ebuild} | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/sci-biology/tablet-bin/tablet-bin-1.16.09.06.ebuild b/sci-biology/tablet-bin/tablet-bin-1.17.08.17.ebuild similarity index 93% rename from sci-biology/tablet-bin/tablet-bin-1.16.09.06.ebuild rename to sci-biology/tablet-bin/tablet-bin-1.17.08.17.ebuild index 401515e00..6934743b1 100644 --- a/sci-biology/tablet-bin/tablet-bin-1.16.09.06.ebuild +++ b/sci-biology/tablet-bin/tablet-bin-1.17.08.17.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2019 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=6 @@ -10,8 +10,8 @@ inherit java-pkg-2 python-r1 DESCRIPTION="Viewer of next generation sequence assemblies and alignments" HOMEPAGE="http://ics.hutton.ac.uk/tablet/"; SRC_URI=" - x86? ( http://bioinf.hutton.ac.uk/tablet/installers/tablet_linux_x86_$(replace_all_version_separators _).sh -> ${P}.sh ) - amd64? ( http://bioinf.hutton.ac.uk/tablet/installers/tablet_linux_x64_$(replace_all_version_separators _).sh -> ${P}.sh ) + x86? ( https://ics.hutton.ac.uk/resources/tablet/installers/tablet_linux_x86_$(replace_all_version_separators _).sh -> ${P}.sh ) + amd64? ( https://ics.hutton.ac.uk/resources/tablet/installers/tablet_linux_x64_$(replace_all_version_separators _).sh -> ${P}.sh ) http://bioinf.hutton.ac.uk/tablet/additional/coveragestats.py"; # Upstream says regarding source code unavailability: @@ -36,7 +36,8 @@ REQUIRED_USE="${PYTHON_REQUIRED_USE}" DEPEND="${PYTHON_DEPS} app-text/dos2unix >=virtual/jdk-1.8:*" -RDEPEND="${DEPEND}" +RDEPEND="${DEPEND} + >=virtual/jre-1.8:*" # contains bundled sqlite-jdbc-3.8.6.jar, samtools-linux64.jar, picard.jar # sqlite-jdbc-3.8.6.jar is not dev-db/sqlite:3 and samtools-linux64.jar is not sci-biology/samtools either # replacing picard.jar with a symlink to picard.jar from sci-biology.picard does not help either
