[gentoo-commits] proj/sci:master commit in: sci-biology/samri/

[Horea Christian]

commit:     1ac50c41899fc23bf770661caca378dcd6457a64
Author:     Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Thu Jan 17 21:21:13 2019 +0000
Commit:     Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Thu Jan 17 21:23:01 2019 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=1ac50c41

sci-biology/samri: added prefix support

Package-Manager: Portage-2.3.56, Repoman-2.3.12
Signed-off-by: Horea Christian <horea.christ <AT> yandex.com>

 sci-biology/samri/samri-9999.ebuild | 18 ++++++++++++++----
 1 file changed, 14 insertions(+), 4 deletions(-)

diff --git a/sci-biology/samri/samri-9999.ebuild 
b/sci-biology/samri/samri-9999.ebuild
index 4f2c64bc7..8a6bc65ae 100644
--- a/sci-biology/samri/samri-9999.ebuild
+++ b/sci-biology/samri/samri-9999.ebuild
@@ -5,7 +5,7 @@ EAPI=7
 
 PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
 
-inherit distutils-r1 git-r3
+inherit distutils-r1 git-r3 prefix
 
 DESCRIPTION="Small Animal Magnetic Resonance Imaging"
 HOMEPAGE="https://github.com/IBT-FMI/SAMRI";
@@ -50,14 +50,24 @@ RDEPEND="
 
 REQUIRED_USE="test? ( atlases )"
 
+src_prepare() {
+       distutils-r1_src_prepare
+       sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI \'/usr/ *`
+       sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI \"/usr/ *`
+       sed -i -e "s:/usr:@GENTOO_PORTAGE_EPREFIX@/usr:g" `grep -rlI /usr/ 
test_scripts.sh`
+       eprefixify $(grep -rl GENTOO_PORTAGE_EPREFIX samri/* test_scripts.sh)
+}
+
 python_test() {
        distutils_install_for_testing
        export MPLBACKEND="agg"
        export PATH=${TEST_DIR}/scripts:$PATH
        export PYTHONIOENCODING=utf-8
        ./test_scripts.sh || die "Test scripts failed."
-       sed -i -e \
-               "/def test_bru2bids():/i...@pytest.mark.skip('Removed in full 
test suite, as this is already tested in `test_scripts.sh`')" \
-               samri/pipelines/tests/test_repos.py || die
+       sed -i \
+               -e '1s/^/import pytest \n/' \
+               -e "/def test_bru2bids():/i...@pytest.mark.skip('Skipped by 
Portage, as this was already tested in test_scripts.sh')" \
+               samri/pipelines/tests/test_reposit.py || die
+       cd "${BUILD_DIR}" || die
        pytest -vv || die
 }