commit: a9b6ba591d4477409c689f8612051d5be85364fa Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Thu Jan 17 12:23:55 2019 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Thu Jan 17 12:23:55 2019 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a9b6ba59
sci-biology/pbbam: new package needed by sci-biology/blasr Builds and install for me, make cmake/clang deps could be improved. https://github.com/PacificBiosciences/pbbam/issues/25 Package-Manager: Portage-2.3.55, Repoman-2.3.12 Signed-off-by: Martin Mokrejs <mmokrejs <AT> fold.natur.cuni.cz> sci-biology/pbbam/metadata.xml | 12 +++++++++ sci-biology/pbbam/pbbam-9999.ebuild | 49 +++++++++++++++++++++++++++++++++++++ 2 files changed, 61 insertions(+) diff --git a/sci-biology/pbbam/metadata.xml b/sci-biology/pbbam/metadata.xml new file mode 100644 index 000000000..138cb7705 --- /dev/null +++ b/sci-biology/pbbam/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>[email protected]</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/pbbam/pbbam-9999.ebuild b/sci-biology/pbbam/pbbam-9999.ebuild new file mode 100644 index 000000000..5593b4072 --- /dev/null +++ b/sci-biology/pbbam/pbbam-9999.ebuild @@ -0,0 +1,49 @@ +# Copyright 1999-2019 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +inherit git-r3 multilib + +DESCRIPTION="PacBio modified BAM file format" +HOMEPAGE="https://pbbam.readthedocs.io/en/latest/index.html"; +EGIT_REPO_URI="https://github.com/PacificBiosciences/pbbam.git"; + +LICENSE="blasr" +SLOT="0" +IUSE="hdf5 doc" +KEYWORDS="" +# https://github.com/PacificBiosciences/pbbam/issues/25 + +CDEPEND=" + dev-util/meson + dev-util/ninja + dev-util/pkgconfig + >=dev-cpp/gtest-1.8.1 + >=dev-lang/swig-3.0.5 + doc? ( app-doc/doxygen )" +DEPEND=" + >=sci-libs/htslib-1.3.1:= + >=dev-libs/boost-1.55:=[threads] + hdf5? ( >=sci-libs/hdf5-1.8.12[cxx] )" # needs H5Cpp.h +RDEPEND="" + +#S="${WORKDIR}/${PN}" + +src_compile(){ + mkdir -p build || die + cd build || die + meson --prefix "${ED}/usr" || die + ninja || die + use doc && ( ninja doc ) +} + +src_install() { + cd build || die + ninja install || die + #dobin bin/* + #insinto /usr/include + #doins include/* + #insinto /usr/$(get_libdir)/${P} + #doins lib/* +}
