commit: 34a0a687d94ea4c3539d81b66558cc816c83cd71
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Fri Dec 14 11:43:36 2018 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Fri Dec 14 11:43:36 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=34a0a687
sci-biology/biobambam2: bring in a release but needs libmaus2 unmasked
Package-Manager: Portage-2.3.52, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs <AT> fold.natur.cuni.cz>
.../{biobambam2-9999.ebuild => biobambam2-2.0.89.ebuild} | 15 ++++++---------
sci-biology/biobambam2/biobambam2-9999.ebuild | 4 ++--
2 files changed, 8 insertions(+), 11 deletions(-)
diff --git a/sci-biology/biobambam2/biobambam2-9999.ebuild
b/sci-biology/biobambam2/biobambam2-2.0.89.ebuild
similarity index 58%
copy from sci-biology/biobambam2/biobambam2-9999.ebuild
copy to sci-biology/biobambam2/biobambam2-2.0.89.ebuild
index 8ddae8f97..f4d9679eb 100644
--- a/sci-biology/biobambam2/biobambam2-9999.ebuild
+++ b/sci-biology/biobambam2/biobambam2-2.0.89.ebuild
@@ -1,13 +1,13 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=6
+EAPI=7
-inherit git-r3 autotools
+inherit autotools
DESCRIPTION="Tools for bam file processing (libmaus2)"
HOMEPAGE="https://github.com/gt1/biobambam2";
-EGIT_REPO_URI="https://github.com/gt1/biobambam2.git";
+SRC_URI="https://github.com/gt1/biobambam2/archive/2.0.89-release-20180518145034.tar.gz";
LICENSE="GPL-3 MIT"
SLOT="0"
@@ -16,13 +16,10 @@ IUSE=""
DEPEND="
!sci-biology/biobambam
- >=sci-libs/libmaus2-2.0.225"
+ >=sci-libs/libmaus2-2.0.489"
RDEPEND="${DEPEND}"
-src_prepare() {
- eautoreconf
- eapply_user
-}
+S="${WORKDIR}"/biobambam2-2.0.89-release-20180518145034
src_configure(){
econf --with-libmaus2="${EPREFIX}"
diff --git a/sci-biology/biobambam2/biobambam2-9999.ebuild
b/sci-biology/biobambam2/biobambam2-9999.ebuild
index 8ddae8f97..e2fc6946a 100644
--- a/sci-biology/biobambam2/biobambam2-9999.ebuild
+++ b/sci-biology/biobambam2/biobambam2-9999.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=6
+EAPI=7
inherit git-r3 autotools
