commit: 95d5b599719ff1ac04a71578573eeb7137cc0668
Author: Horea Christian <horea.christ <AT> yandex <DOT> com>
AuthorDate: Fri Dec 7 01:03:19 2018 +0000
Commit: Horea Christian <horea.christ <AT> gmail <DOT> com>
CommitDate: Fri Dec 7 01:05:01 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=95d5b599
sci-biology/nilearn: version bump
Sadly without unbundling joblib, and it will stay this way until
sci-libs/scikits_learn reverts to system joblib.
Package-Manager: Portage-2.3.52, Repoman-2.3.12
Signed-off-by: Horea Christian <horea.christ <AT> yandex.com>
sci-biology/nilearn/nilearn-0.5.0.ebuild | 57 ++++++++++++++++++++++++++++++++
1 file changed, 57 insertions(+)
diff --git a/sci-biology/nilearn/nilearn-0.5.0.ebuild
b/sci-biology/nilearn/nilearn-0.5.0.ebuild
new file mode 100644
index 000000000..3380e73c6
--- /dev/null
+++ b/sci-biology/nilearn/nilearn-0.5.0.ebuild
@@ -0,0 +1,57 @@
+# Copyright 1999-2018 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
+
+inherit distutils-r1
+
+DESCRIPTION="Fast and easy statistical learning on NeuroImaging data"
+HOMEPAGE="http://nilearn.github.io/";
+SRC_URI="https://github.com/nilearn/nilearn/archive/${PV}.tar.gz ->
${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="+plot test"
+
+DEPEND="
+ test? (
+ ${RDEPEND}
+ dev-python/nose[${PYTHON_USEDEP}]
+ )
+ dev-python/setuptools[${PYTHON_USEDEP}]
+ "
+RDEPEND="
+ dev-python/joblib[${PYTHON_USEDEP}]
+ dev-python/numpy[${PYTHON_USEDEP}]
+ sci-libs/scikits_learn[${PYTHON_USEDEP}]
+ sci-libs/scipy[${PYTHON_USEDEP}]
+ sci-libs/nibabel[${PYTHON_USEDEP}]
+ plot? ( dev-python/matplotlib[${PYTHON_USEDEP}] )"
+
+# (Temporarily) commented out, since Gentoo sci-libs/scikits_learn decided it
+# is a mess to maintain system joblib usage
+#PATCHES=( "${FILESDIR}/0.4.1-bundled_joblib_test.patch" )
+
+python_prepare_all() {
+ # upstream is reluctant to *not* depend on bundled scikits_learn:
+ # https://github.com/nilearn/nilearn/pull/1398
+ # (Temporarily) commented out, since Gentoo sci-libs/scikits_learn
decided it
+ # is a mess to maintain system joblib usage
+ #local f
+ #for f in nilearn/{*/*/,*/,}*.py; do
+ # sed -r \
+ # -e '/^from/s/(sklearn|\.|)\.externals\.joblib/joblib/' \
+ # -e 's/from (sklearn|\.|)\.externals import/import/' \
+ # -i $f || die
+ #done
+
+ distutils-r1_python_prepare_all
+}
+
+python_test() {
+ echo "backend: Agg" > matplotlibrc
+ MPLCONFIGDIR=. nosetests -v || die
+}
