commit: 5cefc888f78905782495d48eef860c64f23bf319 Author: Justin Lecher <jlec <AT> gentoo <DOT> org> AuthorDate: Sat Oct 27 21:08:01 2018 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Sat Oct 27 21:08:01 2018 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=5cefc888
Drop obsolete packages Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> sci-geosciences/qgis/metadata.xml | 19 ---- sci-geosciences/qgis/qgis-9999.ebuild | 109 ---------------------- sci-libs/libgeodecomp/files/cmake.patch | 17 ---- sci-libs/libgeodecomp/libgeodecomp-9999.ebuild | 75 --------------- sci-libs/libgeodecomp/metadata.xml | 41 -------- sci-libs/scikits_image/metadata.xml | 19 ---- sci-libs/scikits_image/scikits_image-9999.ebuild | 52 ----------- sci-mathematics/gambit/gambit-0.2010.09.01.ebuild | 32 ------- sci-mathematics/gambit/metadata.xml | 20 ---- sci-visualization/v_sim/metadata.xml | 17 ---- sci-visualization/v_sim/v_sim-3.6.0.ebuild | 84 ----------------- 11 files changed, 485 deletions(-) diff --git a/sci-geosciences/qgis/metadata.xml b/sci-geosciences/qgis/metadata.xml deleted file mode 100644 index b2ca3f8c7..000000000 --- a/sci-geosciences/qgis/metadata.xml +++ /dev/null @@ -1,19 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Geosciences Project</name> - </maintainer> - <longdescription lang="en"> -Quantum GIS (QGIS) is a user friendly Open Source Geographic -Information System (GIS). QGIS supports vector, raster, and database -formats. QGIS lets you browse and create map data on your -computer. It supports many common spatial data formats (e.g. ESRI -ShapeFile, geotiff). QGIS supports plugins to do things like display -tracks from your GPS. -</longdescription> - <use> - <flag name="grass">Add support for <pkg>sci-geosciences/grass</pkg></flag> - </use> -</pkgmetadata> diff --git a/sci-geosciences/qgis/qgis-9999.ebuild b/sci-geosciences/qgis/qgis-9999.ebuild deleted file mode 100644 index 53ae4df98..000000000 --- a/sci-geosciences/qgis/qgis-9999.ebuild +++ /dev/null @@ -1,109 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) -PYTHON_REQ_USE="sqlite" - -inherit cmake-utils gnome2-utils multilib python-single-r1 subversion eutils - -DESCRIPTION="User friendly Geographic Information System" -HOMEPAGE="http://www.qgis.org/"; -ESVN_REPO_URI="http://svn.osgeo.org/qgis/trunk/qgis"; -SRC_URI="examples? ( http://download.osgeo.org/qgis/data/qgis_sample_data.tar.gz )" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="" -IUSE="examples gps grass gsl postgres python sqlite" - -REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" - -RDEPEND=" - >=sci-libs/gdal-1.6.1[geos,postgres?,python?,sqlite?] - dev-qt/qtcore:4[qt3support] - dev-qt/qtgui:4 - dev-qt/qtsvg:4 - dev-qt/qtsql:4 - dev-qt/qtwebkit:4 - sci-libs/geos - gps? ( - dev-libs/expat - sci-geosciences/gpsbabel - x11-libs/qwt:6= - ) - grass? ( >=sci-geosciences/grass-6.4.0_rc6[postgres?,python?,sqlite?] ) - gsl? ( sci-libs/gsl ) - postgres? ( dev-db/postgresql:* ) - python? ( - ${PYTHON_DEPS} - dev-python/PyQt4[sql,svg,${PYTHON_USEDEP}] - dev-python/sip[${PYTHON_USEDEP}] ) - sqlite? ( dev-db/sqlite:3 )" - -DEPEND="${RDEPEND} - sys-devel/bison - sys-devel/flex" - -pkg_setup() { - python-single-r1_pkg_setup -} - -src_configure() { - local mycmakeargs - mycmakeargs+=( - "-DQGIS_MANUAL_SUBDIR=/share/man/" - "-DBUILD_SHARED_LIBS=ON" - "-DBINDINGS_GLOBAL_INSTALL=ON" - "-DQGIS_LIB_SUBDIR=$(get_libdir)" - "-DQGIS_PLUGIN_SUBDIR=$(get_libdir)/qgis" - "-DWITH_INTERNAL_SPATIALITE:BOOL=OFF" - $(cmake-utils_use_with postgres POSTGRESQL) - $(cmake-utils_use_with grass) - $(cmake-utils_use_with gps EXPAT) - $(cmake-utils_use_with gps QWT) - $(cmake-utils_use_with gsl) - $(cmake-utils_use_with python BINDINGS) - $(cmake-utils_use python BINDINGS_GLOBAL_INSTALL) - $(cmake-utils_use_with spatialite SPATIALITE) - $(cmake-utils_use_enable test TESTS) - $(usex grass "-DGRASS_PREFIX=/usr/" "") - ) - - cmake-utils_src_configure -} - -src_install() { - cmake-utils_src_install - dodoc BUGS ChangeLog CODING README - - newicon -s 128 images/icons/qgis-icon.png qgis.png - make_desktop_entry qgis "Quantum GIS " qgis - - if use examples; then - insinto /usr/share/doc/${PF}/examples - doins -r "${WORKDIR}"/qgis_sample_data/* - fi - python_fix_shebang "${D}"/usr/share/qgis/grass/scripts - python_optimize "${D}"/usr/share/qgis/python/plugins \ - "${D}"/$(python_get_sitedir)/qgis \ - "${D}"/usr/share/qgis/grass/scripts -} - -pkg_preinst() { - gnome2_icon_savelist -} - -pkg_postinst() { - if use postgres; then - elog "If you don't intend to use an external PostGIS server" - elog "you should install:" - elog " dev-db/postgis" - fi - gnome2_icon_cache_update -} - -pkg_postrm() { - gnome2_icon_cache_update -} diff --git a/sci-libs/libgeodecomp/files/cmake.patch b/sci-libs/libgeodecomp/files/cmake.patch deleted file mode 100644 index de6e42f41..000000000 --- a/sci-libs/libgeodecomp/files/cmake.patch +++ /dev/null @@ -1,17 +0,0 @@ -diff -ru libgeodecomp-0.1.0/src/util.cmake libgeodecomp-0.1.0-nju/src/util.cmake ---- libgeodecomp-0.1.0/src/util.cmake 2012-06-27 12:26:46.000000000 +0200 -+++ libgeodecomp-0.1.0-nju/src/util.cmake 2013-01-29 20:52:43.306376967 +0100 -@@ -54,11 +54,11 @@ - endforeach(i) - - if(STRIPPED_SOURCES) -- list(SORT STRIPPED_SOURCES ${STRIPPED_SOURCES}) -+ list(SORT STRIPPED_SOURCES) - endif(STRIPPED_SOURCES) - - if(STRIPPED_HEADERS) -- list(SORT STRIPPED_HEADERS ${STRIPPED_HEADERS}) -+ list(SORT STRIPPED_HEADERS) - endif(STRIPPED_HEADERS) - - set(MY_AUTO "set(SOURCES \${SOURCES}\n") diff --git a/sci-libs/libgeodecomp/libgeodecomp-9999.ebuild b/sci-libs/libgeodecomp/libgeodecomp-9999.ebuild deleted file mode 100644 index 08622044c..000000000 --- a/sci-libs/libgeodecomp/libgeodecomp-9999.ebuild +++ /dev/null @@ -1,75 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -if [ ${PV} == "9999" ] ; then - _SCM=mercurial - EHG_REPO_URI="http://bitbucket.org/gentryx/libgeodecomp"; - SRC_URI="" - KEYWORDS="" - CMAKE_USE_DIR="${S}" -else - SRC_URI="http://www.libgeodecomp.org/archive/${P}.tar.bz2"; - KEYWORDS="~amd64 ~ppc ~x86" - S="${WORKDIR}/${P}" -fi - -inherit cmake-utils cuda ${_SCM} - -DESCRIPTION="An auto-parallelizing library to speed up computer simulations" -HOMEPAGE="http://www.libgeodecomp.org"; - -SLOT="0" -LICENSE="Boost-1.0" -IUSE="cuda doc hpx mpi opencl opencv qt4 scotch threads visit" - -RDEPEND=" - >=dev-libs/boost-1.48 - =dev-libs/libflatarray-9999 - cuda? ( dev-util/nvidia-cuda-toolkit ) - hpx? ( =sys-cluster/hpx-9999 ) - mpi? ( virtual/mpi ) - opencl? ( virtual/opencl ) - opencv? ( media-libs/opencv ) - qt4? ( dev-qt/qtgui:4 ) - scotch? ( sci-libs/scotch ) - visit? ( sci-visualization/visit )" -DEPEND="${RDEPEND} - doc? ( app-doc/doxygen )" - -src_prepare() { - rm -rf {lib,src}/libflatarray || die -} - -src_configure() { - local mycmakeargs=( - -DWITH_BOOST_SERIALIZATION=true - $(cmake-utils_use_with cuda CUDA) - $(cmake-utils_use_with hpx HPX) - $(cmake-utils_use_with mpi BOOST_MPI) - $(cmake-utils_use_with mpi MPI) - $(cmake-utils_use_with opencl OPENCL) - $(cmake-utils_use_with opencv OPENCV) - $(cmake-utils_use_with qt4 QT) - $(cmake-utils_use_with scotch SCOTCH) - $(cmake-utils_use_with threads THREADS) - $(cmake-utils_use_with visit VISIT) - ) - cmake-utils_src_configure -} - -src_compile() { - cmake-utils_src_compile - use doc && cmake-utils_src_make doc -} - -src_install() { - DOCS=( README ) - use doc && HTML_DOCS=( doc/html/* ) - cmake-utils_src_install -} - -src_test() { - cmake-utils_src_make test -} diff --git a/sci-libs/libgeodecomp/metadata.xml b/sci-libs/libgeodecomp/metadata.xml deleted file mode 100644 index b1b9ce281..000000000 --- a/sci-libs/libgeodecomp/metadata.xml +++ /dev/null @@ -1,41 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <longdescription> -LibGeoDecomp is an auto-parallelizing library to speed up stencil -code based computer simulations. It runs on virtually all current -architectures, be it multi-cores, GPUs, or large scale MPI -clusters. -</longdescription> - <maintainer type="person"> - <email>[email protected]</email> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Cluster Project</name> - </maintainer> - <use> - <flag name="cuda"> -Enables plugins for NVIDIA GPUs (e.g. CUDASimulator and CUDAStepper) -</flag> - <flag name="hpx"> -Activates the HPX backend as an alternative to the usual MPI backends. -</flag> - <flag name="opencl"> -Builds those plugins which can offload to OpenCL devices. -</flag> - <flag name="opencv"> -Some input components can read from cameras etc. via OpenCV -</flag> - <flag name="qt4"> -Adds the QTWidgetWriter, which allows in situ visualization of a -running simulation. -</flag> - <flag name="scotch"> -Optinally use Scotch for domain decomposition. -</flag> - <flag name="visit"> -Add in situ visualization for big simulations via VisIt. -</flag> - </use> -</pkgmetadata> diff --git a/sci-libs/scikits_image/metadata.xml b/sci-libs/scikits_image/metadata.xml deleted file mode 100644 index 5ec0e96ff..000000000 --- a/sci-libs/scikits_image/metadata.xml +++ /dev/null @@ -1,19 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Science Project</name> - </maintainer> - <longdescription lang="en"> -This SciKit (toolkit for SciPy) includes useful image processing -algorithms for use with Python and NumPy. While SciPy’s ndimage -provides low-level manipulation, scikits.image centres around -algorithms and applications. -</longdescription> - <use> - <flag name="freeimage">Enable support for image i/o via -<pkg>media-libs/freeimage</pkg></flag> - <flag name="pyamg">Enable support for algebraic solvers via <pkg>dev-python/pyamg</pkg></flag> - </use> -</pkgmetadata> diff --git a/sci-libs/scikits_image/scikits_image-9999.ebuild b/sci-libs/scikits_image/scikits_image-9999.ebuild deleted file mode 100644 index e00facde2..000000000 --- a/sci-libs/scikits_image/scikits_image-9999.ebuild +++ /dev/null @@ -1,52 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 python3_{3,4} ) - -inherit distutils-r1 eutils git-r3 virtualx - -DESCRIPTION="Image processing routines for SciPy" -HOMEPAGE="http://scikit-image.org/"; -EGIT_REPO_URI="https://github.com/scikit-image/scikit-image.git"; - -LICENSE="BSD" -SLOT="0" -KEYWORDS="" -IUSE="doc freeimage gtk pyamg qt4 test" - -RDEPEND=" - >=dev-python/matplotlib-1.1.0[${PYTHON_USEDEP}] - >=dev-python/networkx-1.8[${PYTHON_USEDEP}] - >=dev-python/numpy-1.6.1[${PYTHON_USEDEP}] - >=dev-python/pillow-1.7.8[${PYTHON_USEDEP}] - >=dev-python/six-1.3[${PYTHON_USEDEP}] - >=sci-libs/scipy-0.9[sparse,${PYTHON_USEDEP}] - freeimage? ( media-libs/freeimage ) - gtk? ( dev-python/pygtk[$(python_gen_usedep 'python2*')] ) - pyamg? ( dev-python/pyamg[$(python_gen_usedep 'python2*')] ) - qt4? ( dev-python/PyQt4[${PYTHON_USEDEP}] )" -DEPEND="${RDEPEND} - >=dev-python/cython-0.21[${PYTHON_USEDEP}] - dev-python/setuptools[${PYTHON_USEDEP}] - test? ( - dev-python/nose[${PYTHON_USEDEP}] - )" - -DOCS=( CONTRIBUTORS.txt CONTRIBUTING.txt README.md DEPENDS.txt RELEASE.txt TASKS.txt ) - -python_test() { - distutils_install_for_testing - mkdir for_test && cd for_test || die - echo "backend : Agg" > matplotlibrc || die - echo "backend.qt4 : PyQt4" >> matplotlibrc || die - VIRTUALX_COMMAND=nosetests - MPLCONFIGDIR=. virtualmake --exe -v skimage || die -} - -pkg_postinst() { - optfeature "FITS io capability" dev-python/astropy - #optfeature "io plugin providing a wide variety of formats, including specialized formats using in medical imaging." dev-python/simpleitk - #optfeature "io plugin providing most standard formats" dev-python/imread -} diff --git a/sci-mathematics/gambit/gambit-0.2010.09.01.ebuild b/sci-mathematics/gambit/gambit-0.2010.09.01.ebuild deleted file mode 100644 index 0d78c8971..000000000 --- a/sci-mathematics/gambit/gambit-0.2010.09.01.ebuild +++ /dev/null @@ -1,32 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -WX_GTK_VER="2.8" - -inherit wxwidgets - -DESCRIPTION="Gambit: Software Tools for Game Theory" -HOMEPAGE="http://www.gambit-project.org/doc/index.html"; -SRC_URI="mirror://sourceforge/project/${PN}/${PN}-stable/${PV}/${P}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="X" - -DEPEND=" - X? ( - x11-libs/wxGTK:2.8[X] - x11-libs/gtk+:2 )" -RDEPEND="${DEPEND}" - -src_configure() { - local myconf - if use amd64; then - myconf='--disable-enumpoly' - fi - econf "${myconf}" \ - $(use_enable X gui) -} diff --git a/sci-mathematics/gambit/metadata.xml b/sci-mathematics/gambit/metadata.xml deleted file mode 100644 index c19ddfa46..000000000 --- a/sci-mathematics/gambit/metadata.xml +++ /dev/null @@ -1,20 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Dongxu Li</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Mathematics Project</name> - </maintainer> - <use> - <flag name="X"> -Enable gui support using wxWidgets. -</flag> - </use> - <upstream> - <remote-id type="sourceforge">gambit</remote-id> - </upstream> -</pkgmetadata> diff --git a/sci-visualization/v_sim/metadata.xml b/sci-visualization/v_sim/metadata.xml deleted file mode 100644 index 6a2245773..000000000 --- a/sci-visualization/v_sim/metadata.xml +++ /dev/null @@ -1,17 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Science Project</name> - </maintainer> - <use> - <flag name="abinit">Add support for ABINIT file formats <pkg>sci-physics/abinit</pkg></flag> - <flag name="cube">Add support plug-in support for Cube files (densities and structures)</flag> - <flag name="openbabel">Add support for ABINIT file formats <pkg>sci-chemistry/openbabel</pkg></flag> - <flag name="xsf">plug-in support for files that follow the XCrysDen format for structural positions and densities</flag> - </use> -</pkgmetadata> diff --git a/sci-visualization/v_sim/v_sim-3.6.0.ebuild b/sci-visualization/v_sim/v_sim-3.6.0.ebuild deleted file mode 100644 index cb94d01f8..000000000 --- a/sci-visualization/v_sim/v_sim-3.6.0.ebuild +++ /dev/null @@ -1,84 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit eutils multilib - -DESCRIPTION="Displays atomic structures such as crystals, gain boudaries, molecules" -HOMEPAGE="http://www-drfmc.cea.fr/sp2m/L_Sim/V_Sim/index.en.html"; -SRC_URI="http://www-drfmc.cea.fr/sp2m/L_Sim/V_Sim/download/${P}.tar.bz2"; - -LICENSE="CeCILL-1.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" - -# doc: Adds developer documentation (/usr/share/doc/${PF}/APIreference/) -# Example files are copied even when USE='-doc' -# debug: Adds console debug messages. This is really verbose. -IUSE="abinit blas cube debug doc netcdf openbabel xsf" - -RDEPEND=" - x11-libs/gtk+:2 - dev-libs/glib:2 - x11-libs/pango - media-libs/libpng:0= - virtual/opengl" -DEPEND="${RDEPEND} - abinit? ( sci-physics/abinit sci-libs/etsf_io ) - blas? ( virtual/blas ) - netcdf? ( sci-libs/netcdf ) - openbabel? ( sci-chemistry/openbabel ) - doc? ( >=dev-util/gtk-doc-1.4-r1 )" - -src_prepare() { - # The author follows Debian conventions, hence the example files and docs - # end up in /usr/share/doc/${PN} instead of /usr/share/doc/${PF}. We - # correct this here. - sed -i -e "s@/doc/.\${package}.@/doc/${PF}@g" -e "s@/doc/\$PACKAGE@/doc/${PF}@g" configure \ - || die "sed failed on tweaking configure file" - # TODO: test if this can be done via --docdir - - # The /share/ directories are #define in the code and must be adapted. - sed -i -e "s:/usr/local/:/usr/:g" src/visu_basic.c || die "sed failed on updating directories in visu_basic.c" -} - -src_configure() { - if use doc ; then - gtkdocize || die - fi - local MY_CONF="--without-etsf-io" - use abinit && MY_CONF="--with-etsf-io=/usr --with-etsf-io-include=/usr/lib/finclude --with-etsf-io-libdir=/usr/$(get_libdir)" - econf "${MY_CONF}" \ - $(use_with blas) \ - $(use_with cube) \ - $(use_with netcdf) \ - $(use_with openbabel) \ - $(use_with xsf) \ - $(use_enable doc gtk-doc) \ - $(use_enable debug debug-messages) -} - -src_compile() { - HOME="${S}" emake -} - -pkg_postinst() { - einfo "Example files are in /usr/share/doc/${PF}/examples" - einfo "(even with USE='-doc')" - einfo "" - einfo "The global v_sim config files are in /usr/share/${PN}/" - einfo "There are a few options which can only be configured in these files" - einfo "and not through the UI. For example, one can specify different" - einfo "colors for the box and the axes in the files, but in the UI one can" - einfo "only change them together." - einfo "" - einfo "V_sim uses by default its own weird gtk skin. You can edit the" - einfo "skin settings in /usr/share/${PN}/v_sim.rc" - einfo "You can change the skin file used in the config file v_sim.par:" - einfo "Go to the line 'config_skin[gtk]: V_Sim'. The argument may be:" - einfo "'V_Sim', 'none' or the path to your own rc file. The keyword " - einfo "'V_Sim' stands for the default rc file, /usr/share/v_sim/v_sim.rc" - einfo "If you choose 'none' or if you comment the line, your current" - einfo "gtk skin will be used." -}
