commit: ce87de8a9a7fa8d57c6bd94608cd2b83b1faf8c4 Author: Horea Christian <horea.christ <AT> yandex <DOT> com> AuthorDate: Sun Aug 19 22:15:50 2018 +0000 Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> CommitDate: Sun Aug 19 22:15:50 2018 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ce87de8a
Distributing LAPACK migration files alongside overlay README.md | 4 ++-- scripts/lapack_migration.sh | 22 ++++++++++++++++++++++ scripts/sci-lapack | 18 ++++++++++++++++++ 3 files changed, 42 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index cda4ca018..eb652ee93 100644 --- a/README.md +++ b/README.md @@ -21,8 +21,8 @@ A fix [is being considered](https://github.com/gentoo/sci/issues/805), bit is st In the mean time, the most automated and up-to-date solution (building on [the original one](https://wiki.gentoo.org/wiki/User_talk:Houseofsuns)) is to run: ``` -wget https://raw.githubusercontent.com/IBT-FMI/NeuroGentooProject/master/SharedPrefix/sci-lapack -wget https://raw.githubusercontent.com/IBT-FMI/NeuroGentooProject/master/SharedPrefix/lapack-migration.sh +wget https://gitweb.gentoo.org/proj/sci.git/plain/scripts/sci-lapack +wget https://gitweb.gentoo.org/proj/sci.git/plain/scripts/lapack-migration.sh ./lapack-migration.sh ``` diff --git a/scripts/lapack_migration.sh b/scripts/lapack_migration.sh new file mode 100644 index 000000000..2e6624ada --- /dev/null +++ b/scripts/lapack_migration.sh @@ -0,0 +1,22 @@ +#!/usr/bin/env bash +set -e + +EPREFIX=${1} + +#Link to the workaroud we reproduce in this section : https://wiki.gentoo.org/wiki/User_talk:Houseofsuns#Migration_to_science_overlay_from_main_tree +#Efforts to more permanently address the issue: https://github.com/gentoo/sci/issues/805 +echo "" +echo "Setting Up Eselect for Gentoo Science:" +echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~" +cp "sci-lapack" "${EPREFIX}/etc/portage/package.mask/" +emerge --oneshot --verbose dev-util/cmake >> /dev/null +emerge --oneshot --verbose app-admin/eselect::science >> /dev/null +FEATURES="-preserve-libs":$FEATURES emerge --oneshot --verbose sci-libs/blas-reference::science +eselect blas set reference +FEATURES="-preserve-libs":$FEATURES emerge --oneshot --verbose sci-libs/cblas-reference::science +eselect cblas set reference +FEATURES="-preserve-libs":$FEATURES emerge --oneshot --verbose sci-libs/lapack-reference::science +eselect lapack set reference +FEATURES="-preserve-libs":$FEATURES emerge --oneshot --verbose --exclude sci-libs/blas-reference --exclude sci-libs/cblas-reference --exclude sci-libs/lapack-reference `eix --only-names --installed --in-overlay science` + +emerge -1qv @preserved-rebuild diff --git a/scripts/sci-lapack b/scripts/sci-lapack new file mode 100644 index 000000000..691059927 --- /dev/null +++ b/scripts/sci-lapack @@ -0,0 +1,18 @@ +## mask packages superseded by science overlay +app-admin/eselect::gentoo +app-eselect/eselect-blas +app-eselect/eselect-cblas +app-eselect/eselect-lapack +virtual/blas::gentoo +virtual/cblas::gentoo +virtual/lapack::gentoo +sci-libs/gsl::gentoo +app-doc/blas-docs::gentoo +app-doc/lapack-docs::gentoo +sci-libs/blas-reference::gentoo +sci-libs/cblas-reference::gentoo +sci-libs/lapack-reference::gentoo +sci-libs/mkl::gentoo + +## more recently requires (see: https://github.com/gentoo/sci/issues/878 ) +>=dev-util/cmake-3.12.0
