commit: 75c0f38ac94bb4c86f2c10ef5c0b99227d80cfa9 Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Tue Jun 26 07:59:41 2018 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Tue Jun 26 07:59:41 2018 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=75c0f38a
sci-biology/gffread: fetch gclib and use during compilation The soucre tree is not made to use site-wide installed headers from gclib. I am not going to figure out git commit tag of gclib automagically bundled into some gffread binary when gffread was released (to make a dedicated gclib-$commitnr.tar.gz file for Gentoo/Debian/etc. and to include it into SRC_URI here so gffread could use it. It is the task for upstream author to properly document required versions of dependencies and release them properly. https://github.com/gpertea/gffread/issues/26#issuecomment-400134376 Package-Manager: Portage-2.3.40, Repoman-2.3.9 sci-biology/gffread/files/Makefile.patch | 6 +++--- sci-biology/gffread/gffread-0.9.12.ebuild | 8 +++++--- 2 files changed, 8 insertions(+), 6 deletions(-) diff --git a/sci-biology/gffread/files/Makefile.patch b/sci-biology/gffread/files/Makefile.patch index 45f8c3ebd..35e6b088e 100644 --- a/sci-biology/gffread/files/Makefile.patch +++ b/sci-biology/gffread/files/Makefile.patch @@ -1,8 +1,8 @@ ---- gffread-0.9.12/Makefile 2018-06-26 00:05:05.298388489 +0200 -+++ gffread-0.9.12/Makefile 2018-06-26 00:07:07.461729681 +0200 +--- gffread-0.9.12/Makefile 2018-06-26 09:52:26.024747027 +0200 ++++ gffread-0.9.12/Makefile 2018-06-26 09:52:41.845177021 +0200 @@ -1,4 +1,4 @@ -GCLDIR := ../gclib -+GCLDIR := $(EPREFIX)/usr/include/gclib ++GCLDIR := ../gclib-0.10.2 SEARCHDIRS := -I. -I${GCLDIR} SYSTYPE := $(shell uname) diff --git a/sci-biology/gffread/gffread-0.9.12.ebuild b/sci-biology/gffread/gffread-0.9.12.ebuild index 968ebc256..fc60b9a81 100644 --- a/sci-biology/gffread/gffread-0.9.12.ebuild +++ b/sci-biology/gffread/gffread-0.9.12.ebuild @@ -4,15 +4,17 @@ EAPI=6 DESCRIPTION="GFF/GTF utility providing format conversions, filter/extract regions from FASTA" -HOMEPAGE="https://github.com/gpertea/gffread"; -SRC_URI="https://github.com/gpertea/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" +HOMEPAGE="http://ccb.jhu.edu/software/stringtie/gff.shtml + https://github.com/gpertea/gffread"; +SRC_URI="https://github.com/gpertea/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz + https://github.com/gpertea/gclib/archive/v0.10.2.tar.gz -> gclib-0.10.2.tar.gz" LICENSE="MIT" SLOT="0" KEYWORDS="" IUSE="" -DEPEND="sci-biology/gclib" +DEPEND="" RDEPEND="${DEPEND}" PATCHES=( "${FILESDIR}"/Makefile.patch )
