commit: aec799bdebff49ff57b118a74fe915d8fe77cbe7
Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Jun 25 22:15:08 2018 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Jun 25 22:15:08 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=aec799bd
sci-biology/gclib: new package
Appears bundled in sci-biology/gffread , sci-biology/stringtie and
probably in even more packages.
Package-Manager: Portage-2.3.40, Repoman-2.3.9
sci-biology/gclib/files/Makefile.patch | 41 ++++++++++++++++++++++++++++++++++
sci-biology/gclib/gclib-0.10.2.ebuild | 25 +++++++++++++++++++++
sci-biology/gclib/metadata.xml | 12 ++++++++++
3 files changed, 78 insertions(+)
diff --git a/sci-biology/gclib/files/Makefile.patch
b/sci-biology/gclib/files/Makefile.patch
new file mode 100644
index 000000000..8b32aeca0
--- /dev/null
+++ b/sci-biology/gclib/files/Makefile.patch
@@ -0,0 +1,41 @@
+--- gclib-0.10.2/Makefile 2018-06-25 23:54:30.901037579 +0200
++++ gclib-0.10.2/Makefile 2018-06-25 23:58:26.757488304 +0200
+@@ -38,7 +38,7 @@
+ EXE =
+ endif
+
+-CC := g++
++CXX ?= g++
+
+ BASEFLAGS := -Wall -Wextra ${SEARCHDIRS} $(MARCH) \
+ -D_REENTRANT -fno-exceptions -fno-rtti
+@@ -54,23 +54,24 @@
+ GCC45OPTMAIN :=
+
+ ifeq ($(findstring nodebug,$(MAKECMDGOALS)),)
+- CFLAGS := -g -DDEBUG $(BASEFLAGS)
++ CXXFLAGS += -DDEBUG $(BASEFLAGS)
+ LDFLAGS += -g
+ else
+- CFLAGS := -O2 -DNDEBUG $(BASEFLAGS)
++ CXXFLAGS ?= -O2
++ CXXFLAGS += -DNDEBUG $(BASEFLAGS)
+ ifeq ($(shell expr $(GCC_MAJOR).$(GCC_MINOR) '>=' 4.5),1)
+- CFLAGS += -flto
++ CXXFLAGS += -flto
+ GCC45OPTS := -flto
+ GCC45OPTMAIN := -fwhole-program
+ endif
+ endif
+
+ %.o : %.cpp
+- ${CC} ${CFLAGS} -c $< -o $@
++ ${CXX} ${CXXFLAGS} -c $< -o $@
+
+ # C/C++ linker
+
+-LINKER := g++
++LINKER ?= g++
+ LIBS :=
+ OBJS := GBase.o GStr.o GArgs.o
+
diff --git a/sci-biology/gclib/gclib-0.10.2.ebuild
b/sci-biology/gclib/gclib-0.10.2.ebuild
new file mode 100644
index 000000000..de269eef1
--- /dev/null
+++ b/sci-biology/gclib/gclib-0.10.2.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+DESCRIPTION="GCLib - Genomic C(++) library of reusable code for bioinformatics
projects"
+HOMEPAGE="https://github.com/gpertea/gclib";
+SRC_URI="https://github.com/gpertea/gclib/archive/v0.10.2.tar.gz ->
${P}.tar.gz"
+
+LICENSE="Artistic-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+PATCHES=( "${FILESDIR}"/Makefile.patch )
+
+src_install(){
+ dobin gtest threads
+ dodoc README.md
+ insinto /usr/include/"${PN}"
+ doins *.h *.hh
+}
diff --git a/sci-biology/gclib/metadata.xml b/sci-biology/gclib/metadata.xml
new file mode 100644
index 000000000..138cb7705
--- /dev/null
+++ b/sci-biology/gclib/metadata.xml
@@ -0,0 +1,12 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";>
+<pkgmetadata>
+ <maintainer type="person">
+ <email>[email protected]</email>
+ <name>Martin Mokrejs</name>
+ </maintainer>
+ <maintainer type="project">
+ <email>[email protected]</email>
+ <name>Gentoo Biology Project</name>
+ </maintainer>
+</pkgmetadata>
