commit: 55b9d1daf0b09521f151d2a25e46e4e7e309f9b3 Author: Martin Mokrejš <mmokrejs <AT> gmail <DOT> com> AuthorDate: Fri Feb 9 15:51:13 2018 +0000 Commit: Andreas Sturmlechner <asturm <AT> gentoo <DOT> org> CommitDate: Thu Apr 5 23:24:56 2018 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=55b9d1da
sci-biology/qrna: DEPEND on sci-biology/hmmer:2 Closes: https://github.com/gentoo/gentoo/pull/7134 sci-biology/qrna/qrna-2.0.3c-r3.ebuild | 58 ++++++++++++++++++++++++++++++++++ 1 file changed, 58 insertions(+) diff --git a/sci-biology/qrna/qrna-2.0.3c-r3.ebuild b/sci-biology/qrna/qrna-2.0.3c-r3.ebuild new file mode 100644 index 00000000000..5c580a24d2a --- /dev/null +++ b/sci-biology/qrna/qrna-2.0.3c-r3.ebuild @@ -0,0 +1,58 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit toolchain-funcs + +DESCRIPTION="Prototype ncRNA genefinder" +HOMEPAGE="http://selab.janelia.org/software.html"; +SRC_URI="mirror://gentoo/${P}.tar.bz2" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +RDEPEND=" + dev-lang/perl + sci-biology/hmmer:2" +DEPEND="${RDEPEND}" + +PATCHES=( + "${FILESDIR}"/${P}-glibc-2.10.patch + "${FILESDIR}"/${P}-ldflags.patch +) + +src_prepare() { + default + sed \ + -e "s:^CC.*:CC = $(tc-getCC):" \ + -e "/^AR/s:ar:$(tc-getAR):g" \ + -e "/^RANLIB/s:ranlib:$(tc-getRANLIB):g" \ + -e "/CFLAGS/s:=.*$:= ${CFLAGS}:" \ + -i {src,squid,squid02}/Makefile || die + rm -v squid*/*.a || die +} + +src_compile() { + local d + for d in squid squid02 src; do + emake -C ${d} + done +} + +src_install() { + dobin src/{cfgbuild,eqrna,eqrna_sample,rnamat_main} scripts/* + + newdoc 00README README + dodoc -r documentation/. + + insinto /usr/share/${PN}/data + doins -r lib/. + insinto /usr/share/${PN}/demos + doins -r Demos/. + + # Sets the path to the QRNA data files + doenvd "${FILESDIR}"/26qrna +}
