commit: ee649bc48962c51c37ae92acdd85e65f480e48bf Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Fri Mar 30 23:13:32 2018 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Fri Mar 30 23:13:32 2018 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=ee649bc4
sci-biology/bamql: new package Package-Manager: Portage-2.3.24, Repoman-2.3.6 sci-biology/bamql/bamql-1.5.ebuild | 28 ++++++++++++++++++++++++++++ sci-biology/bamql/metadata.xml | 12 ++++++++++++ 2 files changed, 40 insertions(+) diff --git a/sci-biology/bamql/bamql-1.5.ebuild b/sci-biology/bamql/bamql-1.5.ebuild new file mode 100644 index 000000000..ef78e3753 --- /dev/null +++ b/sci-biology/bamql/bamql-1.5.ebuild @@ -0,0 +1,28 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit autotools + +DESCRIPTION="Extract reads from BAM files" +HOMEPAGE="https://github.com/BoutrosLaboratory/bamql + https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1162-y"; +SRC_URI="https://github.com/BoutrosLaboratory/bamql/archive/v1.5.tar.gz -> ${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND=" + sys-devel/llvm:= + sys-apps/util-linux + sci-libs/htslib + dev-libs/libpcre" +RDEPEND="${DEPEND}" + +src_prepare(){ + eautoreconf + default +} diff --git a/sci-biology/bamql/metadata.xml b/sci-biology/bamql/metadata.xml new file mode 100644 index 000000000..138cb7705 --- /dev/null +++ b/sci-biology/bamql/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>[email protected]</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata>
