commit: cb2c0165a5a3e091ffbbd123a4ab0334a75eed24 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Fri Jan 26 11:05:09 2018 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Fri Jan 26 11:05:09 2018 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=cb2c0165
sci-biology/rtg-tools: package skeleton Will need to ask upstream to provide common 'compile', 'install' and 'all' targets into https://github.com/RealTimeGenomics/rtg-tools/blob/master/build.xml Any volunteers to unbundle the bundled stuff? At least it is not gradle but good old ant. ;) Package-Manager: Portage-2.3.20, Repoman-2.3.6 sci-biology/rtg-tools/metadata.xml | 12 ++++++++ sci-biology/rtg-tools/rtg-tools-9999.ebuild | 44 +++++++++++++++++++++++++++++ 2 files changed, 56 insertions(+) diff --git a/sci-biology/rtg-tools/metadata.xml b/sci-biology/rtg-tools/metadata.xml new file mode 100644 index 000000000..138cb7705 --- /dev/null +++ b/sci-biology/rtg-tools/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>[email protected]</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> diff --git a/sci-biology/rtg-tools/rtg-tools-9999.ebuild b/sci-biology/rtg-tools/rtg-tools-9999.ebuild new file mode 100644 index 000000000..30843a98e --- /dev/null +++ b/sci-biology/rtg-tools/rtg-tools-9999.ebuild @@ -0,0 +1,44 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit java-pkg-2 java-ant-2 eutils git-r3 + +DESCRIPTION="Manipulate and analyze SAM/BAM/VCF files" +HOMEPAGE="https://github.com/RealTimeGenomics/rtg-tools"; +EGIT_REPO_URI="https://github.com/RealTimeGenomics/rtg-tools.git"; + +LICENSE="BSD-2" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND=" + >=virtual/jdk-1.8:* + dev-java/ant-core + dev-java/jython" +RDEPEND="${DEPEND} + >=virtual/jre-1.8:*" + +src_compile(){ + ant runalltests || die +} + +# "${S}"/lib/sam-2.9.1.jar +# "${S}"/lib/findbugs-annotations.jar +# "${S}"/lib/findbugs-jsr305.jar +# "${S}"/lib/velocity-tools-generic.jar +# "${S}"/lib/RPlot.jar +# "${S}"/lib/commons-collections-3.2.1.jar +# "${S}"/lib/velocity-1.7.jar +# "${S}"/lib/commons-compress-1.4.1.jar +# "${S}"/lib/commons-lang-2.4.jar +# "${S}"/lib/jumble-annotations.jar +# "${S}"/lib/sam-2.9.1-src.jar +# "${S}"/lib/gzipfix.jar +# "${S}"/buildLib/ant-contrib-1.0b3.jar +# "${S}"/buildLib/handlechecker.jar +# "${S}"/testLib/hamcrest-core-1.3.jar +# "${S}"/testLib/junit.jar +# "${S}"/testLib/spelling.jar
