commit: f01d815ad584ba9fba254dadefb663bce8eeb010 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Fri Jan 19 22:53:13 2018 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Fri Jan 19 22:53:13 2018 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f01d815a
sci-biology/Sibelia: new package It installs despite the fact it contains bundled 3rd-party stuff. I will contact upstream and see whether they will manage to unbundle the many libs and apps. Package-Manager: Portage-2.3.19, Repoman-2.3.6 sci-biology/Sibelia/Sibelia-9999.ebuild | 31 +++++++++++++++++++++++++++++++ sci-biology/Sibelia/metadata.xml | 12 ++++++++++++ 2 files changed, 43 insertions(+) diff --git a/sci-biology/Sibelia/Sibelia-9999.ebuild b/sci-biology/Sibelia/Sibelia-9999.ebuild new file mode 100644 index 000000000..cfaae8765 --- /dev/null +++ b/sci-biology/Sibelia/Sibelia-9999.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2018 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit cmake-utils git-r3 + +DESCRIPTION="Draw synteny plots using circos" +HOMEPAGE="http://bioinf.spbau.ru/en/sibelia"; +EGIT_REPO_URI="https://github.com/bioinf/Sibelia.git"; + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="" +IUSE="" + +DEPEND=" + dev-libs/boost:0 + dev-cpp/tclap + >=dev-libs/libdivsufsort-2.0.1 + sci-biology/seqan:* + sci-biology/lagan + sci-biology/SnpEff" +# it contains bundled copies of all the above +# we would need to create also a Gentoo package for D3.js +# (BSD License) http://d3js.org +# it links using bundled libdivsufsort-2.0.1/lib/libdivsufsort.a +# it install stuff into /usr/lib/Sibelia/{lagan,snpEff}/ +RDEPEND="${DEPEND}" + +S="${WORKDIR}"/"${P}"/src diff --git a/sci-biology/Sibelia/metadata.xml b/sci-biology/Sibelia/metadata.xml new file mode 100644 index 000000000..138cb7705 --- /dev/null +++ b/sci-biology/Sibelia/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>[email protected]</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata>
