commit: e506aabb717f6536e683c88a998e7b566aab8164
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Jan 8 14:11:10 2018 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Jan 8 14:11:10 2018 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=e506aabb
sci-biology/BRAKER: version bump
Package-Manager: Portage-2.3.19, Repoman-2.3.6
sci-biology/BRAKER/{BRAKER-1.9.ebuild => BRAKER-2.ebuild} | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/sci-biology/BRAKER/BRAKER-1.9.ebuild
b/sci-biology/BRAKER/BRAKER-2.ebuild
similarity index 89%
rename from sci-biology/BRAKER/BRAKER-1.9.ebuild
rename to sci-biology/BRAKER/BRAKER-2.ebuild
index 7c814763f..b4c752457 100644
--- a/sci-biology/BRAKER/BRAKER-1.9.ebuild
+++ b/sci-biology/BRAKER/BRAKER-2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -10,7 +10,7 @@ DESCRIPTION="Gene prediction based on RNA-Seq using
GeneMark-ET and AUGUSTUS"
# http://bioinf.uni-greifswald.de/bioinf/publications/pag2015.pdf
HOMEPAGE="http://bioinf.uni-greifswald.de/bioinf/braker
http://bioinf.uni-greifswald.de/augustus/downloads";
-SRC_URI="
http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1_v"${PV}".tar.gz ->
${P}.tar.gz"
+SRC_URI="http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER"${PV}".tar.gz
-> ${P}.tar.gz"
# Download BRAKER1 from
http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1.tar.gz.
# The most recent release is version 1.8, from December 15th 2015.
# Example data for testing the BRAKER1 pipeline is available at
@@ -31,7 +31,7 @@ RDEPEND="${DEPEND}
# this causes:
# [blocks B ] <perl-core/Scalar-List-Utils-1.380.0
("<perl-core/Scalar-List-Utils-1.380.0" is blocking
virtual/perl-Scalar-List-Utils-1.380.0)
-S="${WORKDIR}"/BRAKER_v"${PV}"
+S="${WORKDIR}"/BRAKER_v"${PV}".0
src_prepare(){
sed -e 's/^use helpMod/use BRAKER::helpMod/' -i braker.pl || die
