commit: 819d5014a7859a590292287d76e5a708daf230c0 Author: Guilherme Amadio <amadio <AT> gentoo <DOT> org> AuthorDate: Thu Dec 14 16:05:56 2017 +0000 Commit: Guilherme Amadio <amadio <AT> gentoo <DOT> org> CommitDate: Fri Dec 15 11:56:09 2017 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=819d5014
sci-physics/root: version bump to 6.12.04 Closes: https://bugs.gentoo.org/622034 Closes: https://bugs.gentoo.org/617160 Closes: https://bugs.gentoo.org/599274 Closes: https://bugs.gentoo.org/596290 Package-Manager: Portage-2.3.18, Repoman-2.3.6 sci-physics/root/Manifest | 1 + sci-physics/root/files/root-6.11.02-hsimple.patch | 34 +++ sci-physics/root/metadata.xml | 32 +- sci-physics/root/root-6.12.04.ebuild | 345 ++++++++++++++++++++++ 4 files changed, 403 insertions(+), 9 deletions(-) diff --git a/sci-physics/root/Manifest b/sci-physics/root/Manifest index a4a16721db4..16e83ab4a34 100644 --- a/sci-physics/root/Manifest +++ b/sci-physics/root/Manifest @@ -1,2 +1,3 @@ DIST root_v5.34.36.source.tar.gz 75427331 BLAKE2B 203af03e1459c7fe079fcb1b30da145b3262f90c074abb7ff8fb3b1b2b90ac24391ce51aa8afbd10e0db8d69549207f15176207bc30a13720e0ae94342a38dfa SHA512 2cc0c8f8b63b2a3ce01c49c41704483548a7324d92c21a63e3e36a00f4d6f5656a7844fdf48cb71a6f2a2c974112527300ffd3bb5502d8365ffaf138e6ae4c7a DIST root_v6.04.06.source.tar.gz 99180724 BLAKE2B 96416ff36bd8e3084ca3a89bb73bfd4750f25d1fbe132ffac0288a7bdebf0200e769efc5e7d5a0d138176db67cb7531cd28124d3b7c568028a125d8a79ec7669 SHA512 ac96ac998ed4894587b7d286d79bcbea7b33f15764cc2513ae089e86c584e2dcb064cd135d44a4bfd2bede368eb772ccbffcd6bf426857a1236f5d7e9f5ce6fd +DIST root_v6.12.04.source.tar.gz 162106020 BLAKE2B f27382cf748d4e31d71b460ecbf9b9f12294fb212bf23dc3d34c98737d8815b2eea2318247e56953ba184bb790bbb2f4b43c675dcb7a02b77c011f19e15d0d83 SHA512 67e400e9e7e8cabfb036a1eb1c262d462f613de7d6e18f8a17109c8eb52932e9ba77e69ab7b1f62c582d06b7f4d020cc888a0dfbefb4d3716743f142c3e3c063 diff --git a/sci-physics/root/files/root-6.11.02-hsimple.patch b/sci-physics/root/files/root-6.11.02-hsimple.patch new file mode 100644 index 00000000000..c1e88bd55b7 --- /dev/null +++ b/sci-physics/root/files/root-6.11.02-hsimple.patch @@ -0,0 +1,34 @@ +diff --git a/CMakeLists.txt b/CMakeLists.txt +index aa05c02568..ef2b5e3f52 100644 +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -354,28 +354,6 @@ add_dependencies(onepcm ${__allTargets}) + install(FILES ${CMAKE_BINARY_DIR}/etc/allDict.cxx.pch DESTINATION ${CMAKE_INSTALL_SYSCONFDIR}) + install(DIRECTORY ${CMAKE_BINARY_DIR}/etc/dictpch DESTINATION ${CMAKE_INSTALL_SYSCONFDIR}) + +-#---hsimple.root---------(use the executable for clearer dependencies and proper return code)--- +-if(NOT WIN32) +-add_custom_target(hsimple ALL DEPENDS tutorials/hsimple.root) +-add_dependencies(hsimple onepcm) +-if(WIN32) +- add_custom_command(OUTPUT tutorials/hsimple.root +- COMMAND set PATH=${CMAKE_RUNTIME_OUTPUT_DIRECTORY} && +- set ROOTIGNOREPREFIX=1 && +- $<TARGET_FILE:root.exe> -l -q -b -n -x hsimple.C -e return +- WORKING_DIRECTORY tutorials +- DEPENDS $<TARGET_FILE:root.exe> Cling Hist Tree Gpad Graf HistPainter move_artifacts) +-else() +- add_custom_command(OUTPUT tutorials/hsimple.root +- COMMAND ${ld_library_path}=${CMAKE_LIBRARY_OUTPUT_DIRECTORY}:$ENV{${ld_library_path}} +- ROOTIGNOREPREFIX=1 +- $<TARGET_FILE:root.exe> -l -q -b -n -x hsimple.C -e return +- WORKING_DIRECTORY tutorials +- DEPENDS $<TARGET_FILE:root.exe> Cling Hist Tree Gpad Graf HistPainter move_artifacts) +-endif() +-install(FILES ${CMAKE_BINARY_DIR}/tutorials/hsimple.root DESTINATION ${CMAKE_INSTALL_TUTDIR} COMPONENT tests) +-endif() +- + #---version-------------------------------------------------------------------------------------- + if(NOT WIN32) + add_custom_target(version COMMAND ${CMAKE_SOURCE_DIR}/build/unix/makeversion.sh ${CMAKE_BINARY_DIR} + diff --git a/sci-physics/root/metadata.xml b/sci-physics/root/metadata.xml index b621201035f..1999cbbbd3b 100644 --- a/sci-physics/root/metadata.xml +++ b/sci-physics/root/metadata.xml @@ -10,28 +10,42 @@ <name>Gentoo Physics Project</name> </maintainer> <longdescription lang="en"> - ROOT Object Oriented Technologies is an object oriented data - analysis framework written in C++ by the CERN. Widely used in - high energy physics, but also in other data analysis applications. It - contains the CINT C/C++ interpreter and many classes such as - statistics, serialization, optimization, linear algebra, graphics, - GUI toolkit, and a complete visualization framework. -</longdescription> + ROOT is a modular scientific software framework. It provides all the + functionality needed to deal with big data processing, statistical analysis, + visualisation and storage. It is mainly written in C++ but integrated with + other languages such as Python and R. ROOT is widely used in high energy + physics, but also in other data analysis applications. It contains the + CINT (ROOT 5.x) or cling (ROOT 6.x) C/C++ interpreter and many other + classes for statistics, serialization, optimization, linear algebra, + graphics, GUI toolkit, and a complete visualization framework. + </longdescription> <use> <flag name="c++11"> Build ROOT using the C++11 standard</flag> <flag name="c++14"> Build ROOT using the C++14 standard</flag> - <flag name="fits">Support for images and data from FITS files with <pkg>sci-libs/cfitsio</pkg></flag> + <flag name="asimage">Enable support for <pkg>media-libs/libafterimage</pkg></flag> + <flag name="davix">Enable support for DAVIX Data Management Client (https://cern.ch/davix)</flag> + <flag name="fits">Enable support for images and data from FITS files with <pkg>sci-libs/cfitsio</pkg></flag> + <flag name="fortran">Compile included Fortran programs</flag> <flag name="gdml">Enable GDML writer and reader</flag> <flag name="geocad">Enable ROOT-CAD interface using <pkg>sci-libs/opencascade</pkg></flag> <flag name="http">Enable http server support including but not limited to fastcgi support</flag> + <flag name="jemalloc">Enable support for <pkg>dev-libs/jemalloc</pkg></flag> + <flag name="libcxx">Build ROOT against <pkg>sys-libs/libcxx</pkg></flag> <flag name="math">Build all math related libraries plugins, needs <pkg>sci-libs/gsl</pkg> </flag> <flag name="memstat">Build memory statistics library, helps to detect memory leaks</flag> + <flag name="minuit">Build ROOT's internal versions of minuit (fortran) and minuit2 (C++)</flag> <flag name="pythia6">Build the interface for <pkg>sci-physics/pythia</pkg> version 6.x </flag> <flag name="pythia8">Build the interface for <pkg>sci-physics/pythia</pkg> version 8.x </flag> + <flag name="R">Enable support for <pkg>dev-lang/R</pkg></flag> <flag name="reflex">Build the reflection database for the C++ interpreter</flag> + <flag name="roofit">Build RooFit function fitting package</flag> + <flag name="root7">Build experimental features to be released with ROOT 7</flag> <flag name="shadow">Enable shadow authentication in rootd and proofd</flag> <flag name="table">Build libTable contrib library</flag> + <flag name="tbb">Enable implicit multi-threading (IMT) with <pkg>dev-cpp/tbb</pkg></flag> + <flag name="tmva">Built TMVA (ROOT's multi-variate analysis toolkit for machine learning)</flag> + <flag name="unuran">Enable support for <pkg>sci-mathematics/unuran</pkg></flag> + <flag name="vc">Enable support for <pkg>dev-libs/vc</pkg> with VecCore</flag> <flag name="xrootd">Build the interface for <pkg>net-libs/xrootd</pkg> </flag> - <flag name="R">Enable support for <pkg>dev-lang/R</pkg></flag> </use> </pkgmetadata> diff --git a/sci-physics/root/root-6.12.04.ebuild b/sci-physics/root/root-6.12.04.ebuild new file mode 100644 index 00000000000..4fb0c10e18f --- /dev/null +++ b/sci-physics/root/root-6.12.04.ebuild @@ -0,0 +1,345 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +CMAKE_BUILD_TYPE=Release +FORTRAN_NEEDED="fortran" +PYTHON_COMPAT=( python2_7 python3_{4,5,6} ) + +inherit cmake-utils elisp-common eutils fortran-2 python-single-r1 \ + toolchain-funcs user versionator xdg-utils + +DESCRIPTION="C++ data analysis framework and interpreter from CERN" +HOMEPAGE="https://root.cern"; +SRC_URI="https://root.cern/download/${PN}_v${PV}.source.tar.gz"; + +IUSE="+X avahi aqua +asimage davix emacs +examples fits fftw fortran +gdml + graphviz +gsl http jemalloc kerberos ldap libcxx +math memstat +minuit + mysql odbc +opengl oracle postgres prefix pythia6 pythia8 +python qt4 + R +roofit root7 shadow sqlite ssl table +tbb test +threads +tiff +tmva + +unuran vc xinetd +xml xrootd" + +MY_PV="$(get_version_component_range 1-2 ${PV})" +MY_P="${PN}/$(get_version_component_range 1-2 ${PV})" +MY_PREFIX=opt/${MY_P} + +SLOT="${MY_PV}/$(get_version_component_range 3 ${PV})" +LICENSE="LGPL-2.1 freedist MSttfEULA LGPL-3 libpng UoI-NCSA" +KEYWORDS="~amd64 ~x86" + +REQUIRED_USE=" + !X? ( !asimage !opengl !qt4 !tiff ) + python? ( ${PYTHON_REQUIRED_USE} ) + pythia6? ( !pythia8 ) + pythia8? ( !pythia6 ) + tmva? ( math gsl ) + davix? ( ssl ) +" + +CDEPEND=" + app-arch/lz4 + app-arch/xz-utils + fortran? ( dev-lang/cfortran ) + dev-libs/libpcre:3= + media-fonts/dejavu + media-libs/freetype:2= + media-libs/libpng:0= + sys-libs/ncurses:= + sys-libs/zlib:0= + X? ( + x11-libs/libX11:0= + x11-libs/libXext:0= + x11-libs/libXft:0= + x11-libs/libXpm:0= + opengl? ( + media-libs/ftgl:0= + media-libs/glew:0= + virtual/opengl + virtual/glu + x11-libs/gl2ps:0= + ) + qt4? ( + dev-qt/qtcore:4= + dev-qt/qtgui:4= + opengl? ( dev-qt/qtopengl:4= ) + ) + ) + asimage? ( || ( + media-libs/libafterimage[gif,jpeg,png,tiff?] + >=x11-wm/afterstep-2.2.11[gif,jpeg,png,tiff?] + ) ) + avahi? ( net-dns/avahi[mdnsresponder-compat] ) + fftw? ( sci-libs/fftw:3.0= ) + fits? ( sci-libs/cfitsio:0= ) + graphviz? ( media-gfx/graphviz:0= ) + gsl? ( sci-libs/gsl ) + http? ( dev-libs/fcgi:0= ) + jemalloc? ( dev-libs/jemalloc ) + kerberos? ( virtual/krb5 ) + ldap? ( net-nds/openldap:0= ) + libcxx? ( sys-libs/libcxx ) + unuran? ( sci-mathematics/unuran:0= ) + minuit? ( !sci-libs/minuit ) + mysql? ( virtual/mysql ) + odbc? ( || ( dev-db/libiodbc dev-db/unixODBC ) ) + oracle? ( dev-db/oracle-instantclient-basic ) + postgres? ( dev-db/postgresql:= ) + pythia6? ( sci-physics/pythia:6= ) + pythia8? ( sci-physics/pythia:8= ) + python? ( ${PYTHON_DEPS} ) + R? ( dev-lang/R ) + shadow? ( virtual/shadow ) + sqlite? ( dev-db/sqlite:3= ) + ssl? ( dev-libs/openssl:0= ) + tbb? ( dev-cpp/tbb ) + vc? ( dev-libs/vc ) + xml? ( dev-libs/libxml2:2= ) + xrootd? ( net-libs/xrootd:0= ) +" + +DEPEND="${CDEPEND} + virtual/pkgconfig" + +RDEPEND="${CDEPEND} + xinetd? ( sys-apps/xinetd )" + +pkg_setup() { + use fortran && fortran-2_pkg_setup + use python && python-single-r1_pkg_setup + + echo + elog "There are extra options on packages not yet in Gentoo:" + elog "Afdsmgrd, AliEn, castor, Chirp, dCache, gfal, Globus, gLite," + elog "HDFS, Monalisa, MaxDB/SapDB, SRP, VecCore." + elog "You can use the env variable EXTRA_ECONF variable for this." + elog "For example, for Chirp, you would set: " + elog "EXTRA_ECONF=\"-Dchirp=ON\"" + echo + + enewgroup rootd + enewuser rootd -1 -1 /var/spool/rootd rootd +} + +src_prepare() { + cmake-utils_src_prepare + + epatch \ + "${FILESDIR}"/${PN}-5.28.00b-glibc212.patch \ + "${FILESDIR}"/${PN}-5.32.00-afs.patch \ + "${FILESDIR}"/${PN}-5.32.00-cfitsio.patch \ + "${FILESDIR}"/${PN}-5.32.00-chklib64.patch \ + "${FILESDIR}"/${PN}-6.00.01-dotfont.patch \ + "${FILESDIR}"/${PN}-6.11.02-hsimple.patch + + # make sure we use system libs and headers + rm montecarlo/eg/inc/cfortran.h README/cfortran.doc || die + rm -r graf2d/asimage/src/libAfterImage || die + rm -r graf3d/ftgl/{inc,src} || die + rm -r graf2d/freetype/src || die + rm -r graf3d/gl/src/gl2ps* || die + rm -r graf3d/glew/{inc,src} || die + rm -r core/pcre/src || die + rm -r math/unuran/src/unuran-*.tar.gz || die + rm -r core/lzma/src/*.tar.gz || die + LANG=C LC_ALL=C find core/zip -type f -name "[a-z]*" -print0 | xargs -0 rm || die + + # CSS should use local images + sed -i -e 's,http://.*/,,' etc/html/ROOT.css || die "html sed failed" +} + +# Note: ROOT uses bundled LLVM, because it is patched and API-incompatible with system LLVM. +# Note: ROOT will install many compiler headers and other files into suboptimal places, so +# we install it into /opt due to QA concerns over the files installed into <prefix>/etc + +src_configure() { + local mycmakeargs=( + -DCMAKE_C_FLAGS="${CFLAGS}" + -DCMAKE_CXX_FLAGS="${CXXFLAGS}" + -DCMAKE_INSTALL_PREFIX="${EPREFIX}/${MY_PREFIX}" + -Dexplicitlink=ON + -Dexceptions=ON + -Dfail-on-missing=ON + -Dshared=ON + -Dsoversion=ON + -Dbuiltin_llvm=ON + -Dbuiltin_afterimage=OFF + -Dbuiltin_cfitsio=OFF + -Dbuiltin_davix=$(usex davix) # not in Gentoo yet + -Dbuiltin_fftw3=OFF + -Dbuiltin_freetype=OFF + -Dbuiltin_ftgl=OFF + -Dbuiltin_glew=OFF + -Dbuiltin_gsl=OFF + -Dbuiltin_lzma=OFF + -Dbuiltin_pcre=OFF + -Dbuiltin_tbb=OFF + -Dbuiltin_unuran=OFF + -Dbuiltin_vc=OFF + -Dbuiltin_xrootd=OFF + -Dbuiltin_zlib=OFF + -Dx11=$(usex X) + -Dxft=$(usex X) + # -Dafs=$(usex afs) # option not implemented + -Dasimage=$(usex asimage) + -Dastiff=$(usex tiff) + -Dbonjour=$(usex avahi) + -Dlibcxx=$(usex libcxx) # default OFF + -Dccache=OFF # use ccache via portage + -Dcastor=OFF # default ON + -Dchirp=OFF # default ON + # -Dcling=$(usex cling) # default ON + -Dcocoa=$(usex aqua) # default * + -Dcxx14=$(usex root7) # default OFF + -Ddavix=$(usex davix) # default * + -Ddcache=OFF # $(usex dcache) # default ON + -Dfftw3=$(usex fftw) # default ON + -Dfitsio=$(usex fits) # default ON + -Dfortran=$(usex fortran) # default * + -Dgdml=$(usex gdml) # default * + -Dgeocad=OFF # default OFF + -Dgenvector=$(usex math) # default ON + -Dgfal=OFF # $(usex gfal) # default ON + -Dglite=OFF #$(usex glite) # default ON (unimplemented option) + -Dglobus=OFF #$(usex globus) # default OFF + -Dgminimal=OFF # default OFF + -Dgnuinstall=OFF # default OFF + -Dgsl_shared=$(usex gsl) # default OFF + -Dgviz=$(usex graphviz) # default ON + -Dhdfs=OFF # $(usex hdfs) # default ON + -Dhttp=$(usex http) # default * + -Dimt=$(usex tbb) # default OFF + -Djemalloc=$(usex jemalloc) # default OFF + -Dkrb5=$(usex kerberos) # default ON + -Dldap=$(usex ldap) # default ON + -Dmathmore=$(usex math) # default ON + -Dmemstat=$(usex memstat) # default * + #-Dminimal=$(usex minimal) # default OFF + -Dminuit=$(usex minuit) + -Dminuit2=$(usex minuit) # default * (broken) + -Dmonalisa=OFF # default ON + -Dmysql=$(usex mysql) # default ON + -Dodbc=$(usex odbc) # default ON + -Dopengl=$(usex opengl) # default ON + -Doracle=$(usex oracle) # default ON + -Dpgsql=$(usex postgres) # default ON + -Dpythia6=$(usex pythia6) # default ON + -Dpythia8=$(usex pythia8) # default ON + -Dpython=$(usex python) # default ON + -Dqt=$(usex qt4) # default Qt + -Dqtgsi=$(usex qt4) # default * + -Droofit=$(usex roofit) # default * + -Droot7=$(usex root7) # default OFF + -Droottest=OFF # default OFF + -Druby=OFF # default OFF + -Dr=$(usex R) # default OFF + -Drfio=OFF # default ON + -Drpath=$(usex prefix) # default OFF + -Dsapdb=OFF # default ON + -Dshadowpw=$(usex shadow) # default ON + -Dsqlite=$(usex sqlite) # default ON + -Dsrp=OFF # default ON (unimplemented option) + -Dssl=$(usex ssl) # default ON + -Dtbb=$(usex tbb) # default OFF + -Dtable=$(usex table) # default * + -Dtcmalloc=OFF # $(usex tcmalloc) # default OFF + -Dtesting=$(usex test) # default OFF + -Dthread=$(usex threads) # default ON + -Dtmva=$(usex tmva) # default ON + -Dunuran=$(usex unuran) # default * + -Dvc=$(usex vc) # default * + -Dvdt=OFF # $(usex math) # default ON + -Dxml=$(usex xml) # default ON + -Dxrootd=$(usex xrootd) # default ON + ${EXTRA_ECONF} + ) + + if use oracle ; then + mycmakeargs+=( + -DORACLE_PATH_INCLUDES="${ORACLE_HOME}/include" + -DORACLE_PATH_LIB="${ORACLE_HOME}/$(get_libdir)" + ) + fi + + cmake-utils_src_configure +} + +daemon_install() { + local daemons="rootd proofd" + dodir /var/spool/rootd + fowners rootd:rootd /var/spool/rootd + dodir /var/spool/rootd/{pub,tmp} + fperms 1777 /var/spool/rootd/{pub,tmp} + + local i + for i in ${daemons}; do + newinitd "${FILESDIR}"/${i}.initd ${i} + newconfd "${FILESDIR}"/${i}.confd ${i} + done + if use xinetd; then + insinto /etc/xinetd + doins "${BUILD_DIR}"/etc/daemons/{rootd,proofd}.xinetd + fi +} + +desktop_install() { + pushd "${S}" > /dev/null + echo "Icon=root-system-bin" >> etc/root.desktop + domenu etc/root.desktop + doicon build/package/debian/root-system-bin.png + + insinto /usr/share/icons/hicolor/48x48/mimetypes + doins build/package/debian/application-x-root.png + + insinto /usr/share/icons/hicolor/48x48/apps + doicon build/package/debian/root-system-bin.xpm +} + +src_install() { + cmake-utils_src_install + + # root fails without this symlink, because it looks only into lib + [[ -d lib ]] || dosym $(get_libdir) /${MY_PREFIX}/lib + + use emacs && elisp-install ${PN} "${BUILD_DIR}"/root-help.el + + echo "PATH=${EPREFIX}/${MY_PREFIX}/bin" > 99root || die + echo "LDPATH=${EPREFIX}/${MY_PREFIX}/$(get_libdir)" >> 99root || die + + if use pythia8; then + echo "PYTHIA8=${EPREFIX}/usr" >> 99root || die + fi + + if use python; then + echo "PYTHONPATH=${EPREFIX}/${MY_PREFIX}/lib" >> 99root + python_optimize "${ED}/${MY_PREFIX}/lib" + fi + + doenvd 99root + + daemon_install + desktop_install + + pushd "${ED}" > /dev/null + rm -r ${MY_PREFIX}/{config,emacs,etc/vmc,fonts} || die + + if ! use examples; then + rm -r ${MY_PREFIX}/{test,tutorials} || die + fi + + if use tmva; then + rm -r ${MY_PREFIX}/tmva || die + fi + + # do not copress files used by ROOT's CLI (.credit, .demo, .license) + docompress -x "${MY_PREFIX}/README/CREDITS" + use examples && docompress -x "${MY_PREFIX}/tutorials" +} + +pkg_postinst() { + xdg_desktop_database_update +} + +pkg_postrm() { + xdg_desktop_database_update +}
