commit: a27c26fa6cd2fe0cb277ecadc0ece01e8d4fa277 Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Thu Nov 16 17:54:47 2017 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Thu Nov 16 17:55:54 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a27c26fa
sci-biology/STAR: In main tree Package-Manager: Portage-2.3.14, Repoman-2.3.6 sci-biology/STAR/STAR-2.4.1c.ebuild | 37 ------------------------------------- 1 file changed, 37 deletions(-) diff --git a/sci-biology/STAR/STAR-2.4.1c.ebuild b/sci-biology/STAR/STAR-2.4.1c.ebuild deleted file mode 100644 index c39ea1e22..000000000 --- a/sci-biology/STAR/STAR-2.4.1c.ebuild +++ /dev/null @@ -1,37 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit toolchain-funcs - -DESCRIPTION="STAR aligner: align RNA-seq reads to reference genome uncompressed suffix arrays" -HOMEPAGE="http://code.google.com/p/rna-star/"; -SRC_URI="https://github.com/alexdobin/STAR/archive/STAR_"${PV}".tar.gz"; - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -# sci-biology/htslib -DEPEND="" -RDEPEND="${DEPEND}" - -S="${WORKDIR}"/STAR-STAR_"${PV}" - -# contains bundled STAR-Fusion -src_prepare(){ - sed -e "s/= gcc/= $(tc-getCC)/;s/-O2/${CFLAGS}/g" -i source/htslib/Makefile || die - sed -e "s/-O3/${CFLAGS}/g" -i source/Makefile || die -} - -src_compile(){ - cd source || die - emake STAR -} - -src_install(){ - dobin source/STAR - dodoc doc/STARmanual.pdf -}
