commit: 06f810d3ebc4b07fdbac596b18d5157df07c309f Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Thu Nov 2 03:24:16 2017 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Thu Nov 2 03:24:16 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=06f810d3
sci-biology/bamtools: Remove, everything in main tree sci-biology/bamtools/bamtools-9999.ebuild | 31 ---------------------- .../bamtools/files/bamtools-2.4.0-unbundle.patch | 23 ---------------- .../bamtools/files/bamtools-9999-unbundle.patch | 23 ---------------- sci-biology/bamtools/metadata.xml | 16 ----------- 4 files changed, 93 deletions(-) diff --git a/sci-biology/bamtools/bamtools-9999.ebuild b/sci-biology/bamtools/bamtools-9999.ebuild deleted file mode 100644 index b02fc7d5b..000000000 --- a/sci-biology/bamtools/bamtools-9999.ebuild +++ /dev/null @@ -1,31 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit cmake-utils git-r3 - -DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files" -HOMEPAGE="https://github.com/pezmaster31/bamtools"; -SRC_URI="" -EGIT_REPO_URI="https://github.com/pezmaster31/bamtools.git"; - -LICENSE="MIT" -SLOT="0" -KEYWORDS="" -IUSE="static-libs" - -DEPEND=" - >=dev-libs/jsoncpp-0.5.0-r1 - <dev-libs/jsoncpp-1 - sys-libs/zlib" -RDEPEND="${DEPEND}" - -PATCHES=( "${FILESDIR}"/${P}-unbundle.patch ) - -src_install() { - cmake-utils_src_install - if ! use static-libs; then - rm "${ED}"/usr/$(get_libdir)/*.a || die - fi -} diff --git a/sci-biology/bamtools/files/bamtools-2.4.0-unbundle.patch b/sci-biology/bamtools/files/bamtools-2.4.0-unbundle.patch deleted file mode 100644 index c07c59d2c..000000000 --- a/sci-biology/bamtools/files/bamtools-2.4.0-unbundle.patch +++ /dev/null @@ -1,23 +0,0 @@ ---- bamtools-2.3.0/src/api/CMakeLists.txt.ori 2013-08-27 18:00:43.000000000 +0200 -+++ bamtools-2.3.0/src/api/CMakeLists.txt 2013-08-27 18:00:47.000000000 +0200 -@@ -54,8 +54,8 @@ - target_link_libraries( BamTools-static ${APILibs} ) - - # set library install destinations --install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin") --install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools") -+install( TARGETS BamTools LIBRARY DESTINATION "lib${LIB_SUFFIX}" RUNTIME DESTINATION "bin") -+install( TARGETS BamTools-static ARCHIVE DESTINATION "lib${LIB_SUFFIX}") - - # export API headers - include(../ExportHeader.cmake) ---- bamtools-2.3.0/src/CMakeLists.txt.ori 2013-08-27 18:03:10.000000000 +0200 -+++ bamtools-2.3.0/src/CMakeLists.txt 2013-08-27 18:03:23.000000000 +0200 -@@ -6,7 +6,6 @@ - # ========================== - - add_subdirectory( api ) --add_subdirectory( third_party ) - add_subdirectory( toolkit ) - add_subdirectory( utils ) - diff --git a/sci-biology/bamtools/files/bamtools-9999-unbundle.patch b/sci-biology/bamtools/files/bamtools-9999-unbundle.patch deleted file mode 100644 index c07c59d2c..000000000 --- a/sci-biology/bamtools/files/bamtools-9999-unbundle.patch +++ /dev/null @@ -1,23 +0,0 @@ ---- bamtools-2.3.0/src/api/CMakeLists.txt.ori 2013-08-27 18:00:43.000000000 +0200 -+++ bamtools-2.3.0/src/api/CMakeLists.txt 2013-08-27 18:00:47.000000000 +0200 -@@ -54,8 +54,8 @@ - target_link_libraries( BamTools-static ${APILibs} ) - - # set library install destinations --install( TARGETS BamTools LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin") --install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools") -+install( TARGETS BamTools LIBRARY DESTINATION "lib${LIB_SUFFIX}" RUNTIME DESTINATION "bin") -+install( TARGETS BamTools-static ARCHIVE DESTINATION "lib${LIB_SUFFIX}") - - # export API headers - include(../ExportHeader.cmake) ---- bamtools-2.3.0/src/CMakeLists.txt.ori 2013-08-27 18:03:10.000000000 +0200 -+++ bamtools-2.3.0/src/CMakeLists.txt 2013-08-27 18:03:23.000000000 +0200 -@@ -6,7 +6,6 @@ - # ========================== - - add_subdirectory( api ) --add_subdirectory( third_party ) - add_subdirectory( toolkit ) - add_subdirectory( utils ) - diff --git a/sci-biology/bamtools/metadata.xml b/sci-biology/bamtools/metadata.xml deleted file mode 100644 index 7f0271ab3..000000000 --- a/sci-biology/bamtools/metadata.xml +++ /dev/null @@ -1,16 +0,0 @@ -<?xml version='1.0' encoding='UTF-8'?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> - <longdescription>BAM (Binary Alignment/Map) format is useful for storing large DNA sequence alignments. It is closely related to the text-based SAM format, but optimized for random-access. BamTools provides a fast, flexible C++ API for reading and writing BAM files.</longdescription> - <upstream> - <remote-id type="github">pezmaster31/bamtools</remote-id> - </upstream> -</pkgmetadata>
