[gentoo-commits] proj/sci:master commit in: sci-biology/SPAdes/

[Martin Mokrejs]

commit:     7a4c5e17a64afe18b4af992e6b2df279ecd9e7e6
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun May 14 11:49:02 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun May 14 11:49:02 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=7a4c5e17

sci-biology/SPAdes: install the package directly using cmake

Package-Manager: Portage-2.3.5, Repoman-2.3.2

 sci-biology/SPAdes/SPAdes-3.10.1.ebuild | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/sci-biology/SPAdes/SPAdes-3.10.1.ebuild 
b/sci-biology/SPAdes/SPAdes-3.10.1.ebuild
index 73050c1e4..de93157a4 100644
--- a/sci-biology/SPAdes/SPAdes-3.10.1.ebuild
+++ b/sci-biology/SPAdes/SPAdes-3.10.1.ebuild
@@ -68,12 +68,14 @@ src_prepare(){
 }
 
 src_compile(){
-       # grr, it actually also installs the files into $DESTDIR but that is 
purged before pkg_qmerge starts
-       PREFIX="${D}"/usr ./spades_compile.sh || die
+       mkdir build_spades || die
+       cd build_spades || die
+       cmake -G "Unix Makefiles" -DCMAKE_INSTALL_PREFIX="${ED}/usr" $* 
"${S}/src" || die
 }
 
 src_install(){
-       PREFIX="${ED}"/usr sh ./spades_install.sh || die
+       cd build_spades || die
+       emake install PREFIX="${ED}"/usr
        # BUG: move *.py files to standard site-packages/ subdirectories
        insinto /usr/share/"${PN}"
        dodoc "${DISTDIR}"/${P}_*manual.html