commit: dd5bb4b8cc71f77e7aad3ab65237d45921dc4f1f
Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Apr 20 17:27:10 2017 +0000
Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Apr 20 17:27:10 2017 +0000
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=dd5bb4b8
sci-biology/oncotator: add license file
licenses/oncotator | 46 ++++++++++++++++++++++++++++++++++++++++++++++
1 file changed, 46 insertions(+)
diff --git a/licenses/oncotator b/licenses/oncotator
new file mode 100644
index 000000000..0528987f4
--- /dev/null
+++ b/licenses/oncotator
@@ -0,0 +1,46 @@
+By downloading the PROGRAM you agree to the following terms of use:
+
+BROAD INSTITUTE SOFTWARE LICENSE AGREEMENT
+FOR ACADEMIC NON-COMMERCIAL RESEARCH PURPOSES ONLY
+
+This Agreement is made between the Broad Institute, Inc. with a principal
address at 7 Cambridge Center, Cambridge, MA 02142 ("BROAD") and the LICENSEE
and is effective at the date the downloading is completed ("EFFECTIVE DATE").
+
+WHEREAS, LICENSEE desires to license the PROGRAM, as defined hereinafter, and
BROAD wishes to have this PROGRAM utilized in the public interest, subject only
to the royalty-free, nonexclusive, nontransferable license rights of the United
States Government pursuant to 48 CFR 52.227-14; and
+
+WHEREAS, LICENSEE desires to license the PROGRAM and BROAD desires to grant a
license on the following terms and conditions.
+
+NOW, THEREFORE, in consideration of the promises and covenants made herein,
the parties hereto agree as follows:
+
+1. DEFINITIONS
+1.1 "PROGRAM" shall mean the object code and source code known as Oncotator
1.0 and related documentation, if any, as they exist on the EFFECTIVE DATE and
can be downloaded from http://www.broadinstitute.org/cancer/cga/oncotator on
the EFFECTIVE DATE. BROAD acknowledges that the PROGRAM employs one or more
public domain code(s) that are freely available for public use.
+
+2. LICENSE
+2.1 Grant. Subject to the terms of this Agreement, BROAD hereby grants to
LICENSEE, solely for academic non-commercial research purposes, a
non-exclusive, non-transferable license to: (a) download, execute and display
the PROGRAM and (b) create bug fixes and modify the PROGRAM. LICENSEE hereby
automatically grants to BROAD a non-exclusive, royalty-free, irrevocable
license to any LICENSEE bug fixes or modifications to the PROGRAM with
unlimited rights to sublicense and/or distribute. LICENSEE agrees to provide
any such modifications and bug fixes to BROAD promptly upon their creation.
The LICENSEE may apply the PROGRAM in a pipeline to data owned by users other
than the LICENSEE and provide these users the results of the PROGRAM provided
LICENSEE does so for academic non-commercial purposes only. For clarification
purposes, academic sponsored research is not a commercial use under the terms
of this Agreement.
+2.2 No Sublicensing or Additional Rights. LICENSEE shall not sublicense or
distribute the PROGRAM, in whole or in part, without prior written permission
from BROAD. LICENSEE shall ensure that all of its users agree to the terms of
this Agreement. LICENSEE further agrees that it shall not put the PROGRAM on a
network, server, or other similar technology that may be accessed by anyone
other than the LICENSEE and its employees and users who have agreed to the
terms of this agreement.
+2.3 License Limitations. Nothing in this Agreement shall be construed to
confer any rights upon LICENSEE by implication, estoppel, or otherwise to any
computer software, trademark, intellectual property, or patent rights of BROAD,
or of any other entity, except as expressly granted herein. LICENSEE agrees
that the PROGRAM, in whole or part, shall not be used for any commercial
purpose, including without limitation, as the basis of a commercial software or
hardware product or to provide services. LICENSEE further agrees that the
PROGRAM shall not be copied or otherwise adapted in order to circumvent the
need for obtaining a license for use of the PROGRAM.
+
+3. OWNERSHIP OF INTELLECTUAL PROPERTY
+LICENSEE acknowledges that title to the PROGRAM shall remain with BROAD. The
PROGRAM is marked with the following BROAD copyright notice and notice of
attribution to contributors. LICENSEE shall retain such notice on all copies.
LICENSEE agrees to include appropriate attribution if any results obtained from
use of the PROGRAM are included in any publication.
+
+Copyright 2014 Broad Institute, Inc.
+Notice of attribution: The Oncotator 1.0 program was made available through
the generosity of the Broad Institute, Inc.
+
+LICENSEE shall not use any trademark or trade name of BROAD, or any variation,
adaptation, or abbreviation, of such marks or trade names, or any names of
officers, faculty, students, employees, or agents of BROAD except as states
above for attribution purposes.
+
+4. INDEMNIFICATION
+LICENSEE shall indemnify, defend, and hold harmless BROAD, and their
respective officers, faculty, students, employees, associated investigators and
agents, and their respective successors, heirs and assigns, ("Indemnitees"),
against any liability, damage, loss, or expense (including reasonable attorney
fees and expenses) incurred by or imposed upon any of the Indemnitees in
connection with any claims, suits, actions, demands or judgments arising out of
any theory of liability (including, without limitation, actions in the form of
tort, warranty, or strict liability and regardless of whether such action has
any factual basis) pursuant to any right or license granted under this
Agreement.
+
+5. NO REPRESENTATIONS OR WARRANTIES
+THE PROGRAM IS DELIVERED "AS IS." BROAD MAKES NO REPRESENTATIONS OR
WARRANTIES OF ANY KIND CONCERNING THE PROGRAM OR THE COPYRIGHT, EXPRESS OR
IMPLIED, INCLUDING, WITHOUT LIMITATION, WARRANTIES OF MERCHANTABILITY, FITNESS
FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER
DEFECTS, WHETHER OR NOT DISCOVERABLE. BROAD EXTENDS NO WARRANTIES OF ANY KIND
AS TO PROGRAM CONFORMITY WITH WHATEVER USER MANUALS OR OTHER LITERATURE MAY BE
ISSUED FROM TIME TO TIME. IN NO EVENT SHALL BROAD OR ITS RESPECTIVE DIRECTORS,
OFFICERS, EMPLOYEES, AFFILIATED INVESTIGATORS AND AFFILIATES BE LIABLE FOR
INCIDENTAL OR CONSEQUENTIAL DAMAGES OF ANY KIND, INCLUDING, WITHOUT LIMITATION,
ECONOMIC DAMAGES OR INJURY TO PROPERTY AND LOST PROFITS, REGARDLESS OF WHETHER
BROAD SHALL BE ADVISED, SHALL HAVE OTHER REASON TO KNOW, OR IN FACT SHALL KNOW
OF THE POSSIBILITY OF THE FOREGOING.
+
+6. ASSIGNMENT
+This Agreement is personal to LICENSEE and any rights or obligations assigned
by LICENSEE without the prior written consent of BROAD shall be null and void.
+
+7. MISCELLANEOUS
+7.1 Export Control. LICENSEE gives assurance that it will comply with all
United States export control laws and regulations controlling the export of the
PROGRAM, including, without limitation, all Export Administration Regulations
of the United States Department of Commerce. Among other things, these laws and
regulations prohibit, or require a license for, the export of certain types of
software to specified countries.
+7.2 Termination. LICENSEE shall have the right to terminate this Agreement for
any reason upon prior written notice to BROAD. If LICENSEE breaches any
provision hereunder, and fails to cure such breach within thirty (30) days,
BROAD may terminate this Agreement immediately. Upon termination, LICENSEE
shall provide BROAD with written assurance that the original and all copies of
the PROGRAM have been destroyed, except that, upon prior written authorization
from BROAD, LICENSEE may retain a copy for archive purposes.
+7.3 Survival. The following provisions shall survive the expiration or
termination of this Agreement: Articles 1, 3, 4, 5 and Sections 2.2, 2.3, 7.3,
and 7.4.
+7.4 Notice. Any notices under this Agreement shall be in writing, shall
specifically refer to this Agreement, and shall be sent by hand, recognized
national overnight courier, confirmed facsimile transmission, confirmed
electronic mail, or registered or certified mail, postage prepaid, return
receipt requested. All notices under this Agreement shall be deemed effective
upon receipt.
+7.5 Amendment and Waiver; Entire Agreement. This Agreement may be amended,
supplemented, or otherwise modified only by means of a written instrument
signed by all parties. Any waiver of any rights or failure to act in a specific
instance shall relate only to such instance and shall not be construed as an
agreement to waive any rights or fail to act in any other instance, whether or
not similar. This Agreement constitutes the entire agreement among the parties
with respect to its subject matter and supersedes prior agreements or
understandings between the parties relating to its subject matter.
+7.6 Binding Effect; Headings. This Agreement shall be binding upon and inure
to the benefit of the parties and their respective permitted successors and
assigns. All headings are for convenience only and shall not affect the meaning
of any provision of this Agreement.
+7.7 Governing Law. This Agreement shall be construed, governed, interpreted
and applied in accordance with the internal laws of the Commonwealth of
Massachusetts, U.S.A., without regard to conflict of laws principles.
