commit: a49693d0c2a28c3fa680e18fbb42a0a3d29079f5 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Thu Apr 20 16:53:29 2017 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Thu Apr 20 16:53:29 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=a49693d0
dev-python/ngslib: new package Package-Manager: Portage-2.3.5, Repoman-2.3.2 dev-python/ngslib/metadata.xml | 12 ++++++++++++ dev-python/ngslib/ngslib-1.1.19.ebuild | 23 +++++++++++++++++++++++ 2 files changed, 35 insertions(+) diff --git a/dev-python/ngslib/metadata.xml b/dev-python/ngslib/metadata.xml new file mode 100644 index 000000000..f68a1b6fa --- /dev/null +++ b/dev-python/ngslib/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> +<pkgmetadata> + <maintainer type="person"> + <email>[email protected]</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>[email protected]</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> diff --git a/dev-python/ngslib/ngslib-1.1.19.ebuild b/dev-python/ngslib/ngslib-1.1.19.ebuild new file mode 100644 index 000000000..5885bce3c --- /dev/null +++ b/dev-python/ngslib/ngslib-1.1.19.ebuild @@ -0,0 +1,23 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 ) +inherit distutils-r1 + +DESCRIPTION="Work with BED, WIG, BigWIG, 2bit files in python" +HOMEPAGE="https://pypi.python.org/pypi/ngslib"; +SRC_URI="https://pypi.python.org/packages/da/90/862bde7ea3e7a1f064872f51200b1558efa7c58df8131c39352f1c35fbdd/${P}.tar.gz"; + +LICENSE="GPL-3" # but Jim Kent's lib is 'for personal, academic and non-profit use only' +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND=" + >=sci-biology/pysam-0.8.2 + >=dev-python/numpy-1.4.1" +RDEPEND="${DEPEND}" + +# contains bundled Jim Kent's library jkweb.a, probab;y do 'rm -rf ./external'
