commit: 51fe11a3b2a3519a325f9cb86f1b27ea0cf9ec62 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Tue Apr 18 12:09:06 2017 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Tue Apr 18 12:09:06 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=51fe11a3
sci-libs/libmaus2: make configure to enable optional but highly wanted features The configure by default has a number of features disables, and does not enable the option. It somehow does not even try to look for headers and libs from say snappy unless --enable-snappy was passed. Try to blindly enable most of the features although it is not clear whether say gnutls should be preferred over nettle, likewise when --enable-sse4 is any better --enable-sse3 (and should not be enabled concurrently with it). Package-Manager: Portage-2.3.5, Repoman-2.3.2 sci-libs/libmaus2/libmaus2-9999.ebuild | 20 +++++++++++++++++--- 1 file changed, 17 insertions(+), 3 deletions(-) diff --git a/sci-libs/libmaus2/libmaus2-9999.ebuild b/sci-libs/libmaus2/libmaus2-9999.ebuild index ab60eeb60..fcf29886d 100644 --- a/sci-libs/libmaus2/libmaus2-9999.ebuild +++ b/sci-libs/libmaus2/libmaus2-9999.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2014 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 EAPI=6 @@ -12,19 +12,33 @@ EGIT_REPO_URI="https://github.com/gt1/libmaus2.git"; LICENSE="GPL-3" # BUG: a mix of licenses, see AUTHORS SLOT="0" KEYWORDS="" -IUSE="" +IUSE="cpu_flags_x86_ssse3 cpu_flags_x86_sse4_1 cpu_flags_x86_sse4_2" DEPEND=" !sci-libs/libmaus sci-libs/io_lib app-arch/snappy - sci-biology/seqan" + sci-biology/seqan + sci-libs/fftw + sci-libs/hdf5 + net-libs/gnutls + dev-libs/nettle" +# --with-daligner +# --with-irods src_prepare() { eautoreconf eapply_user } +src_configure(){ + local CONFIG_OPTS + use cpu_flags_x86_ssse3 && CONFIG_OPTS+=( --enable-ssse3 ) + ( use cpu_flags_x86_sse4_1 || use cpu_flags_x86_sse4_2 ) && CONFIG_OPTS+=( --enable-sse4 ) + econf --with-snappy --with-seqan --with-io_lib $CONFIG_OPTS \ + --with-lzma --with-gnutls --with-nettle --with-hdf5 --with-gmp --with-fftw +} + pkg_postinst(){ einfo "The io_lib, snappy and seqan dependencies are not strictly needed" einfo "but were forced for optimal libmaus2 performance."
