[gentoo-commits] proj/sci:master commit in: sci-biology/ncbi-tools++/

[Martin Mokrejs]

commit:     ad511c8fb80754d29a9fa8e2b10e87be87d073ad
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Tue Apr 11 08:41:28 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Apr 11 08:41:28 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=ad511c8f

sci-biology/ncbi-tools++: add note on idfetch collision by upstream

Package-Manager: Portage-2.3.5, Repoman-2.3.2

 sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild 
b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
index ec3852d76..3f1fc7bd1 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
@@ -362,6 +362,12 @@ src_install() {
        mv -f "${ED}"/usr/bin/test_regexp "${ED}"/usr/bin/test_regexp+ # drop 
the eventually mistakenly compiled binaries
        mv "${ED}"/usr/bin/vecscreen "${ED}"/usr/bin/vecscreen+
        mv "${ED}"/usr/bin/seedtop "${ED}"/usr/bin/seedtop+
+       #
+       # idfetch collides with idfetch from ncbi-tools-2.2.26
+       # Although the two idfetch implementations do deliberately have several
+       # options in common, the C++ version is not yet a full drop-in 
replacement
+       # for the C version (and will never entirely be, due to fundamental
+       # differences between the two toolkits' argument-parsing conventions).
        mv "${ED}"/usr/bin/idfetch "${ED}"/usr/bin/idfetch+ # new in 
ncbi-tools++-18.0.0
 
        echo "LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}" > ${S}/99${PN}