commit: f24af6299aa5620534e523e440f8e47de17cdda4 Author: Justin Lecher <jlec <AT> gentoo <DOT> org> AuthorDate: Sun Mar 26 08:36:03 2017 +0000 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> CommitDate: Sun Mar 26 08:36:03 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=f24af629
Drop masked package - sci-biology/artemis-bin Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> profiles/package.mask | 2 - sci-biology/artemis-bin/artemis-bin-16.0.11.ebuild | 62 ---------------------- sci-biology/artemis-bin/metadata.xml | 12 ----- 3 files changed, 76 deletions(-) diff --git a/profiles/package.mask b/profiles/package.mask index 1a9c65629..10d2ae630 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -58,8 +58,6 @@ sci-mathematics/scilab # Justin Lecher <[email protected]> (03 March 2013) # Missing deps -dev-python/pymvpa -sci-biology/artemis-bin # Justin Lecher <[email protected]> (28 Apr 2012) # Doesn't install pkg-config files, which many packages rely on diff --git a/sci-biology/artemis-bin/artemis-bin-16.0.11.ebuild b/sci-biology/artemis-bin/artemis-bin-16.0.11.ebuild deleted file mode 100644 index 7d71b1563..000000000 --- a/sci-biology/artemis-bin/artemis-bin-16.0.11.ebuild +++ /dev/null @@ -1,62 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -inherit java-pkg-2 - -MY_V="16" - -DESCRIPTION="DNA sequence viewer, annotation (Artemis) without comparison (ACT) tool" -HOMEPAGE="http://www.sanger.ac.uk/resources/software/artemis"; -SRC_URI=" - ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/v"${MY_V}"/v"${PV}"/artemis_compiled_v"${PV}".tar.gz - ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/v"${MY_V}"/v"${PV}"/artemis_v"${PV}".jar - ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/v"${MY_V}"/v"${PV}"/sartemis_v"${PV}".jar - ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/v"${MY_V}"/artemis_manual_complete.pdf -> ${P}.manual.pdf - ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/v"${MY_V}"/release_notes.txt -> ${P}.release_notes.txt - ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/v"${MY_V}"/art_html_build.zip -> ${P}.html_build.zip" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -S="${WORKDIR}" - -DEPEND=" - !sci-biology/artemis - sci-biology/samtools:0" -RDEPEND="${DEPEND} - >=virtual/jre-1.6" - -src_unpack(){ - unzip "${DISTDIR}"/${P}.html_build.zip || die -} - -src_prepare(){ - default - cd art_html_build || die - rm -f .DS_Store HTML.index HTML.manifest || die -} - -src_install(){ - cp -p "${DISTDIR}"/artemis_v"${PV}".jar artemis.jar || die - java-pkg_dojar artemis.jar - cp -p "${DISTDIR}"/sartemis_v"${PV}".jar sartemis.jar || die - java-pkg_dojar sartemis.jar - dodoc "${DISTDIR}"/${P}.manual.pdf "${DISTDIR}"/${P}.release_notes.txt - insinto /usr/share/doc/"${PN}"/html - doins art_html_build/* -} - -# artemis_compiled_v16.0.11.tar.gz contains compiled binaries but also java *.class files -# artemis_v16.0.11.jar and sartemis_v16.0.11.jar -# ftp://ftp.sanger.ac.uk/pub/resources/software/artemis/v16/v16.0.11/ - -pkg_postinst(){ - einfo "For BAM file support please install sci-biology/BamView" - einfo "You may find interesting the additional web resources:" - einfo "http://www.webact.org/WebACT"; - einfo "http://www.hpa-bioinfotools.org.uk/pise/double_act.html"; -} diff --git a/sci-biology/artemis-bin/metadata.xml b/sci-biology/artemis-bin/metadata.xml deleted file mode 100644 index f68a1b6fa..000000000 --- a/sci-biology/artemis-bin/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd";> -<pkgmetadata> - <maintainer type="person"> - <email>[email protected]</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>[email protected]</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata>
