commit: 3b77d415ff6c692b3e08907626656f0112f22108 Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Sat Feb 25 18:45:25 2017 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Sat Feb 25 19:18:26 2017 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3b77d415
sci-biology/amos: Remove old Package-Manager: Portage-2.3.3, Repoman-2.3.1 sci-biology/amos/amos-3.1.0-r2.ebuild | 48 ----------------------------------- sci-biology/amos/amos-3.1.0.ebuild | 29 --------------------- 2 files changed, 77 deletions(-) diff --git a/sci-biology/amos/amos-3.1.0-r2.ebuild b/sci-biology/amos/amos-3.1.0-r2.ebuild deleted file mode 100644 index 91c1f69f97..0000000000 --- a/sci-biology/amos/amos-3.1.0-r2.ebuild +++ /dev/null @@ -1,48 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=6 - -PYTHON_COMPAT=( python2_7 ) - -inherit flag-o-matic python-r1 - -DESCRIPTION="A Modular, Open-Source whole genome assembler" -HOMEPAGE="http://amos.sourceforge.net/"; -SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz - https://dev.gentoo.org/~soap/distfiles/${PN}-3.1.0-fix-c++14.patch.bz2"; - -LICENSE="Artistic" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="qt4" - -DEPEND="qt4? ( dev-qt/qtcore:4 )" -RDEPEND="${DEPEND} - dev-perl/DBI - dev-perl/Statistics-Descriptive - sci-biology/mummer" - -PATCHES=( - "${FILESDIR}"/${P}-gcc-4.7.patch - "${FILESDIR}"/${P}-goBambus2.py-indent-and-cleanup.patch - "${WORKDIR}"/${P}-fix-c++14.patch - "${FILESDIR}"/${P}-qa-Wformat.patch -) - -src_configure() { - # prevent GCC 6 log pollution due to hash_map deprecation in C++11 - append-cxxflags -Wno-cpp - - default -} - -src_compile() { - emake -j1 -} - -src_install() { - default - python_replicate_script "${ED%/}/usr/bin/goBambus2" -} diff --git a/sci-biology/amos/amos-3.1.0.ebuild b/sci-biology/amos/amos-3.1.0.ebuild deleted file mode 100644 index 945ec9f41b..0000000000 --- a/sci-biology/amos/amos-3.1.0.ebuild +++ /dev/null @@ -1,29 +0,0 @@ -# Copyright 1999-2013 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=4 - -inherit eutils - -DESCRIPTION="A Modular, Open-Source whole genome assembler" -HOMEPAGE="http://amos.sourceforge.net/"; -SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz" - -LICENSE="Artistic" -SLOT="0" -KEYWORDS="amd64 x86" -IUSE="qt4" - -DEPEND="qt4? ( dev-qt/qtcore:4 )" -RDEPEND="${DEPEND} - dev-perl/DBI - dev-perl/Statistics-Descriptive - sci-biology/mummer" - -MAKEOPTS+=" -j1" - -src_prepare() { - epatch \ - "${FILESDIR}"/${P}-gcc-4.7.patch -}
