commit: e5ce74fb32afe018ef0d58ff9bfb8192abb62019 Author: David Seifert <soap <AT> gentoo <DOT> org> AuthorDate: Sat Feb 25 15:46:24 2017 +0000 Commit: David Seifert <soap <AT> gentoo <DOT> org> CommitDate: Sat Feb 25 15:49:01 2017 +0000 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e5ce74fb
sci-biology/exonerate: Modernise to EAPI 6 Package-Manager: Portage-2.3.3, Repoman-2.3.1 ...e-2.2.0-r1.ebuild => exonerate-2.2.0-r2.ebuild} | 38 ++++++++++------------ .../exonerate/files/exonerate-2.2.0-asneeded.patch | 4 +-- 2 files changed, 20 insertions(+), 22 deletions(-) diff --git a/sci-biology/exonerate/exonerate-2.2.0-r1.ebuild b/sci-biology/exonerate/exonerate-2.2.0-r2.ebuild similarity index 53% rename from sci-biology/exonerate/exonerate-2.2.0-r1.ebuild rename to sci-biology/exonerate/exonerate-2.2.0-r2.ebuild index 966f7c2f8e..567b906ca2 100644 --- a/sci-biology/exonerate/exonerate-2.2.0-r1.ebuild +++ b/sci-biology/exonerate/exonerate-2.2.0-r2.ebuild @@ -1,50 +1,48 @@ -# Copyright 1999-2013 Gentoo Foundation +# Copyright 1999-2017 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ -EAPI=4 +EAPI=6 -AUTOTOOLS_AUTORECONF=true - -inherit autotools-utils toolchain-funcs +inherit autotools toolchain-funcs DESCRIPTION="Generic tool for pairwise sequence comparison" -HOMEPAGE="http://www.ebi.ac.uk/~guy/exonerate/"; -SRC_URI="http://www.ebi.ac.uk/~guy/exonerate/${P}.tar.gz"; +HOMEPAGE="https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate"; +SRC_URI="http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/${P}.tar.gz"; LICENSE="GPL-3" SLOT="0" KEYWORDS="~amd64 ~x86 ~ppc-macos ~x64-macos" -IUSE="utils test threads" - +IUSE="test threads utils" REQUIRED_USE="test? ( utils )" DEPEND="dev-libs/glib:2" RDEPEND="${DEPEND}" -AUTOTOOLS_IN_SOURCE_BUILD=1 - PATCHES=( "${FILESDIR}"/${P}-asneeded.patch ) src_prepare() { - tc-export CC + default sed \ -e 's: -O3 -finline-functions::g' \ -i configure.in || die - autotools-utils_src_prepare + mv configure.{in,ac} || die + + eautoreconf } src_configure() { - local myeconfargs=( - $(use_enable utils utilities) + tc-export CC + + econf \ + --enable-glib2 \ + --enable-largefile \ + $(use_enable utils utilities) \ $(use_enable threads pthreads) - --enable-largefile - --enable-glib2 - ) - autotools-utils_src_configure } src_install() { - autotools-utils_src_install + default + doman doc/man/man1/*.1 } diff --git a/sci-biology/exonerate/files/exonerate-2.2.0-asneeded.patch b/sci-biology/exonerate/files/exonerate-2.2.0-asneeded.patch index 3268055cd5..5c428979a1 100644 --- a/sci-biology/exonerate/files/exonerate-2.2.0-asneeded.patch +++ b/sci-biology/exonerate/files/exonerate-2.2.0-asneeded.patch @@ -2,8 +2,8 @@ Fix build with --as-needed https://bugs.gentoo.org/268094 ---- configure.in -+++ configure.in +--- a/configure.in ++++ b/configure.in @@ -289,7 +289,7 @@ if test "$enable_pthreads" = yes; then echo "Using PTHREADS"
