[gentoo-commits] proj/sci:master commit in: sci-biology/lumpy-sv/

[Martin Mokrejs]

commit:     48c6d4a6e09db35e06cbcd8cafd5d3471aaf4526
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Sun Feb 19 18:41:59 2017 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Sun Feb 19 18:41:59 2017 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=48c6d4a6

sci-biology/lumpy-sv: more tweaks to the install procedure

Package-Manager: Portage-2.3.3, Repoman-2.3.1

 sci-biology/lumpy-sv/lumpy-sv-9999.ebuild | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/sci-biology/lumpy-sv/lumpy-sv-9999.ebuild 
b/sci-biology/lumpy-sv/lumpy-sv-9999.ebuild
index c6154555c..c7c37c2a0 100644
--- a/sci-biology/lumpy-sv/lumpy-sv-9999.ebuild
+++ b/sci-biology/lumpy-sv/lumpy-sv-9999.ebuild
@@ -32,9 +32,13 @@ src_install(){
        rm -f bin/lumpyexpress.config
        dobin bin/*
        insinto /usr/share/lumpy-sv/scripts
-       for f in lumpy lumpy_filter lumpyexpress; do
-               rm bin/"$f" || die
+       for f in lumpyexpress lumpyexpress.config; do
+               rm scripts/"$f" || die
        done
        doins scripts/*
        dodoc README.md
+       insinto /usr/share/lumpy-sv/scripts/bamkit
+       cd scripts/bamkit || die
+       doins *.py sectosupp
+       newdoc README.md README_bamkit.md
 }