commit: 1326710c5da26210005f4ec496b0c0a1af917077 Author: Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> AuthorDate: Sat Feb 18 20:22:12 2017 +0000 Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> CommitDate: Sat Feb 18 20:22:12 2017 +0000 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=1326710c
sci-biology/jtreeview: add 3.0_alpha version which executes fine Package-Manager: Portage-2.3.3, Repoman-2.3.1 sci-biology/jtreeview/jtreeview-9999.ebuild | 40 +++++++++++++++++++++++++++++ 1 file changed, 40 insertions(+) diff --git a/sci-biology/jtreeview/jtreeview-9999.ebuild b/sci-biology/jtreeview/jtreeview-9999.ebuild new file mode 100644 index 000000000..24c5427ae --- /dev/null +++ b/sci-biology/jtreeview/jtreeview-9999.ebuild @@ -0,0 +1,40 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +PERL_EXPORT_PHASE_FUNCTIONS=no +inherit java-pkg-2 git-r3 + +DESCRIPTION="Viewer for Microarray Data in PCL or CDT formats" +HOMEPAGE="http://jtreeview.sourceforge.net + https://bitbucket.org/TreeView3Dev/treeview3"; +EGIT_REPO_URI="https://bitbucket.org/TreeView3Dev/treeview3.git"; + +LICENSE="MIT" +SLOT="0" +KEYWORDS="" # builds and executes fines +IUSE="" + +DEPEND=">virtual/jdk-1.7:*" +RDEPEND="${DEPEND} + >=virtual/jre-1.7:*" + +src_prepare(){ + chmod u+x ./gradle* || die + eapply_user +} + +src_compile(){ + # work around gradle writing $HOME/.gradle, requiring $HOME/.git and $HOME/.m2/ + # https://github.com/samtools/htsjdk/issues/660#issuecomment-232155965 + # make jure SDK-1.8 is available, JRE-1.8 is not enough + GRADLE_USER_HOME="${WORKDIR}" ./gradlew || die +} + +src_install(){ + cd build/libs || die + java-pkg_dojar *.jar + java-pkg_dolauncher ${PN} +}
